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-<h2><span class="headeru">JA</span>va <span class="headeru">B</span>ioinformatics <span class="headeru">A</span>nalyses <span class="headeru">W</span>eb <span class="headeru">S</span>ervices<h2>\r
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+<tr><td style="width:130px;"><a href="http://www.dundee.ac.uk"><img class="logo" src="images/uod_lt.gif" alt="University of Dundee" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
+<td class="bg"><h2><span class="headeru">JA</span>va <span class=\r
+"headeru">B</span>ioinformatics <span class="headeru">A</span>nalysis <span class="headeru">W</span>eb <span\r
+class="headeru">S</span>ervices</h2></td>\r
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+<div id="panel"><a href="index.html">Home</a> <a href=\r
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+<a href="http://www.compbio.dundee.ac.uk">Barton Group</a> \r
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-\r
<h4><a name="minclient" id="minclient"></a>JABAWS Client</h4>\r
-<p>\r
-For anyone who would like to program against JABA Web Services or use a command line client.\r
-<a href="http://www.compbio.dundee.ac.uk/jaba/archive/min-jaba-client.jar">Download</a> (64k)</p>\r
+\r
+<p>The client is an executable java archive which provides a\r
+command line client, and can be used by anyone who would like to\r
+program against the JABA Web Services in Java.</p>\r
+\r
+<ul>\r
+<li>JABAWS java client: <a href=\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/min-jaba-client.jar">download</a>\r
+(64k)</li>\r
+</ul>\r
\r
<h4>JABAWS Server</h4>\r
-<p>\r
-Download this if you intend to run JABAWS for your lab/university locally. \r
+\r
+<p>The server is provided as a self-contained web application\r
+archive containing all necessary binaries, ready to install in any\r
+'modern' Java based web application server\r
+<!-- Note - mention servlet 2.4 compliance here? -->. Download this\r
+if you intend to run JABAWS services locally.</p>\r
+\r
<ul>\r
-<li>A Complete Server for all platforms: <a href="http://www.compbio.dundee.ac.uk/jaba/archive/jaba.war">download</a> (45M)</li>\r
-<li>A Complete Server for windows: <a href="http://www.compbio.dundee.ac.uk/jaba/archive/jaba-windows.war">download</a> (16M)</li>\r
+<li>A Complete Server for all platforms: <a href=\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba.war">download</a>\r
+(45M)</li>\r
+\r
+<li>A Complete Server for windows: <a href=\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-windows.war">download</a>\r
+(16M)</li>\r
</ul>\r
-</p>\r
+\r
\r
<div class="source">\r
-<div class="header collapsed" onclick="$(this).toggleClassName('collapsed'); $(this).next('.body').toggleClassName('collapsed');" title="Click to open/close">Packages for experts</div> <div class="body collapsed">\r
- <h4>JABAWS server without alignment programs</h4>\r
- <p>If you have all the programs or wish to download them separately this package is for you</p>\r
- <p>Complete Server without native executables: <a href="http://www.compbio.dundee.ac.uk/jaba/archive/jaba-no-binaries.war">download</a> (14M) </p>\r
- <h4>JABAWS server without JAX-WS</h4>\r
- <p>\r
- Download this if you intend to run JABAWS for your lab/institute locally. \r
- This package does not contain <a href="https://jax-ws.dev.java.net/">JAX-WS</a> libraries required to run JABAWS. This package is intended for anyone who have JAX-WS libraries already installed on their web application servers. In this case JABAWS will be using the libraries supplied by your web application server. This way you can avoid any version conflicts. </p>\r
- <ul>\r
- <li>Server for all platforms: <a href="http://www.compbio.dundee.ac.uk/jaba/archive/jaba-no-jaxws.war">download</a> (31M)</li>\r
- <li>Server for windows: <a href="http://www.compbio.dundee.ac.uk/jaba/archive/jaba-no-jaxws-windows.war">download</a> (2M)</li>\r
- <li>Server without binaries: <a href="http://www.compbio.dundee.ac.uk/jaba/archive/jaba-no-jaxws-no-binaries.war">download</a> (<1M) </li>\r
- </ul>\r
-\r
-\r
-<h4>JABAWS framework </h4>\r
-<p>\r
-This package is for developers who would like to use JABAWS code to control native executables in local or cluster environments. It is a JABA code without web services part. \r
+<div class="header" onclick=\r
+"$(this).toggleClassName('collapsed'); $(this).next('.body').toggleClassName('collapsed');"\r
+ title="Click to open/close">Packages for experts</div>\r
+\r
+<div class="body">\r
+<h4>JABAWS server without alignment programs</h4>\r
+\r
+<p>If you have all the programs or wish to download them\r
+separately, then this package is for you.</p>\r
+<ul>\r
+ <li>Complete Server without native executables: <a href=\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-no-binaries.war">\r
+download</a> (14M)</li></ul>\r
+\r
+<h4>JABAWS server without JAX-WS</h4>\r
+\r
+<p>Download this if you intend to run JABAWS for your lab/institute\r
+locally, and have a java web application server which already has\r
+the JAX-WS libraries installed. This package does not contain <a\r
+href="https://jax-ws.dev.java.net/">JAX-WS</a> libraries, so its\r
+installation will not cause any version conflicts.<br />\r
+<em>Note: If you find the server does not work, then we suggest you\r
+try installing the full JABAWS server package.</em></p>\r
+\r
<ul>\r
- <li>A framework package: <a href="http://www.compbio.dundee.ac.uk/jaba/archive/full-jaba-client-pack.zip">download</a>(31M)</li>\r
+<li>Server (without JAX-WS) for all platforms: <a href=\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-no-jaxws.war">download</a>\r
+(31M)</li>\r
+\r
+<li>Server (without JAX-WS) for windows: <a href=\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-no-jaxws-windows.war">\r
+download</a> (2M)</li>\r
+\r
+<li>Server (without JAX-WS) without binaries: <a href=\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-no-jaxws-no-binaries.war">\r
+download</a> (<1M)</li>\r
</ul>\r
-</p>\r
\r
-<h4>A complete source code</h4>\r
-<p>We offer the code under <a href="http://www.apache.org/licenses/LICENSE-2.0.txt">Apache version 2 licence</a> please feel free to download and use our product as well as the source code.\r
-Code comes in the form of an <a href="http://www.eclipse.org">Eclipse</a> project. However, Eclipse is not necessary to run it. Look into build.xml Ant task to find a variety of useful tasks among them are the tasks to run test cases.\r
+<h4>JABAWS execution framework</h4>\r
+\r
+<p>This package is for developers who would like to use JABAWS's\r
+execution system in their own Java programs to control native\r
+executables in local or cluster environments. It is the JABAWS code\r
+without the server components.</p>\r
+\r
<ul>\r
- <li>\r
-A complete eclipse project package: <a href="http://www.compbio.dundee.ac.uk/jaba/archive/jaba-project.zip">download</a> (82M)</li>\r
- <li>Source only package: <a href="archive/jaba-source.jar">download</a> (25K) </li>\r
+<li>The framework package: <a href=\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/full-jaba-client-pack.zip">\r
+download</a>(31M)</li>\r
+</ul> \r
+\r
+<h4>The complete source code</h4>\r
+\r
+<p>We offer the code under <a href=\r
+"http://www.apache.org/licenses/LICENSE-2.0.txt">Apache version 2\r
+licence</a> please feel free to download and use our product as\r
+well as the source code. The code comes in the form of an <a href=\r
+"http://www.eclipse.org">Eclipse</a> project, but Eclipse is not\r
+necessary to run it. Please examine the Ant build file (build.xml)\r
+to find out how to build JABAWS from source, and execute a variety\r
+of useful tasks, including a task for runing the JABAWS test\r
+cases.</p>\r
+\r
+<ul>\r
+<li>A complete eclipse project package: <a href=\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-project.zip">download</a>\r
+(82M)</li>\r
+\r
+<li>Source only package: <a href=\r
+"archive/jaba-source.jar">download</a> (25K)</li>\r
</ul>\r
-</p>\r
-</div><!--body end -->\r
-</div> <!--source end -->\r
+\r
+<br />\r
+<br />\r
+</div>\r
+\r
+<!--body end -->\r
+</div>\r
+\r
+<!--source end -->\r
+</div>\r
+\r
+<!-- content end-->\r
+<div id="copyright">Last update: 19 August 2010<br />\r
+ Peter Troshin and Geoff Barton, The Barton Group, University of\r
+Dundee, UK</div>\r
</div>\r
-<!-- content end--> \r
-<div id="copyright">Last update: 7 July 2010<br/>\r
-Peter Troshin and Geoff Barton, The Barton Group, University of Dundee, UK</div>\r
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