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remove old datamodel javadoc
[jabaws.git] / website / full_javadoc / compbio / engine / Configurator.html
diff --git a/website/full_javadoc/compbio/engine/Configurator.html b/website/full_javadoc/compbio/engine/Configurator.html
index 61bbed4..2c4ae6c 100644 (file)
--- a/website/full_javadoc/compbio/engine/Configurator.html
+++ b/website/full_javadoc/compbio/engine/Configurator.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:49 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:35 BST 2011 -->\r
 <TITLE>\r
 Configurator\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-08-12">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../stylesheet.css" TITLE="Style">\r
 \r
@@ -92,12 +92,12 @@ compbio.engine</FONT>
 <BR>\r
 Class Configurator</H2>\r
 <PRE>\r
-java.lang.Object\r
+<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
   <IMG SRC="../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.Configurator</B>\r
 </PRE>\r
 <HR>\r
 <DL>\r
-<DT><PRE>public class <B>Configurator</B><DT>extends java.lang.Object</DL>\r
+<DT><PRE>public class <B>Configurator</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
 </PRE>\r
 \r
 <P>\r
@@ -114,7 +114,7 @@ java.lang.Object
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static&nbsp;java.lang.String</CODE></FONT></TD>\r
+<CODE>static&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#CLUSTER_WORK_DIRECTORY">CLUSTER_WORK_DIRECTORY</A></B></CODE>\r
 \r
 <BR>\r
@@ -138,7 +138,7 @@ java.lang.Object
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static&nbsp;java.lang.String</CODE></FONT></TD>\r
+<CODE>static&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#LOCAL_WORK_DIRECTORY">LOCAL_WORK_DIRECTORY</A></B></CODE>\r
 \r
 <BR>\r
@@ -212,7 +212,7 @@ java.lang.Object
 </TABLE>\r
 </CODE></FONT></TD>\r
 <TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#configureExecutable(compbio.engine.client.Executable, java.util.List)">configureExecutable</A></B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;T&gt;&nbsp;executable,\r
-                    java.util.List&lt;<A HREF="../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;&nbsp;dataSet)</CODE>\r
+                    <A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;&nbsp;dataSet)</CODE>\r
 \r
 <BR>\r
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
@@ -237,7 +237,7 @@ java.lang.Object
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
 <CODE>static&nbsp;<A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A></CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getAsyncEngine(java.lang.String)">getAsyncEngine</A></B>(java.lang.String&nbsp;taskId)</CODE>\r
+<TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getAsyncEngine(java.lang.String)">getAsyncEngine</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</CODE>\r
 \r
 <BR>\r
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
@@ -261,8 +261,8 @@ java.lang.Object
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static&nbsp;java.lang.String</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getWorkDirectory(java.lang.String)">getWorkDirectory</A></B>(java.lang.String&nbsp;taskId)</CODE>\r
+<CODE>static&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../compbio/engine/Configurator.html#getWorkDirectory(java.lang.String)">getWorkDirectory</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</CODE>\r
 \r
 <BR>\r
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>\r
@@ -271,10 +271,10 @@ java.lang.Object
 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>\r
+<TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
 </TR>\r
 <TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>\r
+<TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
 </TR>\r
 </TABLE>\r
 &nbsp;\r
@@ -313,7 +313,7 @@ public static final boolean <B>IS_CLUSTER_ENGINE_ENABLED</B></PRE>
 <A NAME="LOCAL_WORK_DIRECTORY"><!-- --></A><H3>\r
 LOCAL_WORK_DIRECTORY</H3>\r
 <PRE>\r
-public static final java.lang.String <B>LOCAL_WORK_DIRECTORY</B></PRE>\r
+public static final <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>LOCAL_WORK_DIRECTORY</B></PRE>\r
 <DL>\r
 <DL>\r
 </DL>\r
@@ -323,7 +323,7 @@ public static final java.lang.String <B>LOCAL_WORK_DIRECTORY</B></PRE>
 <A NAME="CLUSTER_WORK_DIRECTORY"><!-- --></A><H3>\r
 CLUSTER_WORK_DIRECTORY</H3>\r
 <PRE>\r
-public static final java.lang.String <B>CLUSTER_WORK_DIRECTORY</B></PRE>\r
+public static final <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>CLUSTER_WORK_DIRECTORY</B></PRE>\r
 <DL>\r
 <DL>\r
 </DL>\r
@@ -374,7 +374,7 @@ public static &lt;T&gt; <A HREF="../../compbio/engine/client/ConfiguredExecutabl
 configureExecutable</H3>\r
 <PRE>\r
 public static &lt;T&gt; <A HREF="../../compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client">ConfiguredExecutable</A>&lt;T&gt; <B>configureExecutable</B>(<A HREF="../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A>&lt;T&gt;&nbsp;executable,\r
-                                                              java.util.List&lt;<A HREF="../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;&nbsp;dataSet)\r
+                                                              <A HREF="http://java.sun.com/javase/6/docs/api/java/util/List.html?is-external=true" title="class or interface in java.util">List</A>&lt;<A HREF="../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>&gt;&nbsp;dataSet)\r
                                                    throws <A HREF="../../compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A></PRE>\r
 <DL>\r
 <DD><DL>\r
@@ -441,7 +441,7 @@ public static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface
 <A NAME="getAsyncEngine(java.lang.String)"><!-- --></A><H3>\r
 getAsyncEngine</H3>\r
 <PRE>\r
-public static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A> <B>getAsyncEngine</B>(java.lang.String&nbsp;taskId)</PRE>\r
+public static <A HREF="../../compbio/engine/AsyncExecutor.html" title="interface in compbio.engine">AsyncExecutor</A> <B>getAsyncEngine</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</PRE>\r
 <DL>\r
 <DD><DL>\r
 </DL>\r
@@ -466,7 +466,7 @@ public static <A HREF="../../compbio/engine/SyncExecutor.html" title="interface
 <A NAME="getWorkDirectory(java.lang.String)"><!-- --></A><H3>\r
 getWorkDirectory</H3>\r
 <PRE>\r
-public static java.lang.String <B>getWorkDirectory</B>(java.lang.String&nbsp;taskId)</PRE>\r
+public static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getWorkDirectory</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;taskId)</PRE>\r
 <DL>\r
 <DD><DL>\r
 </DL>\r