+++ /dev/null
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-<TITLE>\r
-PropertyHelperManager\r
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-<BR>\r
-Class PropertyHelperManager</H2>\r
-<PRE>\r
-<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
- <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.conf.PropertyHelperManager</B>\r
-</PRE>\r
-<HR>\r
-<DL>\r
-<DT><PRE>public final class <B>PropertyHelperManager</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
-</PRE>\r
-\r
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-\r
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-<!-- =========== FIELD SUMMARY =========== -->\r
-\r
-<A NAME="field_summary"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
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-<B>Field Summary</B></FONT></TH>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/PropertyHelperManager.html#confDir">confDir</A></B></CODE>\r
-\r
-<BR>\r
- </TD>\r
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-</TABLE>\r
- \r
-<!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
-\r
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-<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
-<B>Constructor Summary</B></FONT></TH>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/PropertyHelperManager.html#PropertyHelperManager()">PropertyHelperManager</A></B>()</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-</TABLE>\r
- \r
-<!-- ========== METHOD SUMMARY =========== -->\r
-\r
-<A NAME="method_summary"><!-- --></A>\r
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-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/PropertyHelperManager.html#getLocalPath()">getLocalPath</A></B>()</CODE>\r
-\r
-<BR>\r
- Method return the absolute path to the project root directory.</TD>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static compbio.util.PropertyHelper</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/PropertyHelperManager.html#getPropertyHelper()">getPropertyHelper</A></B>()</CODE>\r
-\r
-<BR>\r
- Ways to fix path problem: 1) find a path to WEB-INF directory based on
- the path to a known class.</TD>\r
-</TR>\r
-</TABLE>\r
- <A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
-</TR>\r
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-<TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
-</TR>\r
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-\r
-<!-- ============ FIELD DETAIL =========== -->\r
-\r
-<A NAME="field_detail"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
-<TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
-<B>Field Detail</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<A NAME="confDir"><!-- --></A><H3>\r
-confDir</H3>\r
-<PRE>\r
-public static final <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>confDir</B></PRE>\r
-<DL>\r
-<DL>\r
-</DL>\r
-</DL>\r
-\r
-<!-- ========= CONSTRUCTOR DETAIL ======== -->\r
-\r
-<A NAME="constructor_detail"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
-<TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
-<B>Constructor Detail</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<A NAME="PropertyHelperManager()"><!-- --></A><H3>\r
-PropertyHelperManager</H3>\r
-<PRE>\r
-public <B>PropertyHelperManager</B>()</PRE>\r
-<DL>\r
-</DL>\r
-\r
-<!-- ============ METHOD DETAIL ========== -->\r
-\r
-<A NAME="method_detail"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
-<TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
-<B>Method Detail</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<A NAME="getPropertyHelper()"><!-- --></A><H3>\r
-getPropertyHelper</H3>\r
-<PRE>\r
-public static compbio.util.PropertyHelper <B>getPropertyHelper</B>()</PRE>\r
-<DL>\r
-<DD>Ways to fix path problem: 1) find a path to WEB-INF directory based on
- the path to a known class. Then prepend this absolute path to the rest of
- paths pros: no input from user cons: relocation of the source may cause
- problems 2) Require users to add configuration directories to the class
- path and then load entries from it. pros: cons: Many paths needs to be
- added. Put significant burden on the user. Hard to tell web appl server
- to add these entries to its class path. 3) Ask for project source
- directory explicitly in the configuration. pros cons: similar to 1, but
- this initial configuration file must reside in well known location! Why
- ask users what can be found automatically? 4) Have everything in the
- location already in class path for tomcat. cons: only classes and
- lib/*.jar are added, eclipse will remove non classses from classes dir.
-
- Try 1 - succeed.\r
-<P>\r
-<DD><DL>\r
-\r
-<DT><B>Returns:</B><DD>an instance</DL>\r
-</DD>\r
-</DL>\r
-<HR>\r
-\r
-<A NAME="getLocalPath()"><!-- --></A><H3>\r
-getLocalPath</H3>\r
-<PRE>\r
-public static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getLocalPath</B>()</PRE>\r
-<DL>\r
-<DD>Method return the absolute path to the project root directory. It assumes
- the following structure of the project project root conf settings
- binaries WEB-INF classes compbio engine conf If the structure changes it
- must be reflected in this method\r
-<P>\r
-<DD><DL>\r
-\r
-<DT><B>Returns:</B><DD>the local path\r
-<DT><B>Throws:</B>\r
-<DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/RuntimeException.html?is-external=true" title="class or interface in java.lang">RuntimeException</A></CODE> - if cannot determine the local path</DL>\r
-</DD>\r
-</DL>\r
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