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-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:51 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:36 BST 2011 -->\r
<TITLE>\r
Deprecated List\r
</TITLE>\r
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-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-08-12">\r
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<LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">\r
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</CENTER>\r
<HR SIZE="4" NOSHADE>\r
<B>Contents</B><UL>\r
+<LI><A HREF="#class">Deprecated Classes</A>\r
+<LI><A HREF="#enum">Deprecated Enums</A>\r
<LI><A HREF="#method">Deprecated Methods</A>\r
</UL>\r
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+<A NAME="class"><!-- --></A>\r
+<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
+<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
+<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
+<B>Deprecated Classes</B></FONT></TH>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD><A HREF="compbio/engine/conf/_Key.html" title="class in compbio.engine.conf">compbio.engine.conf._Key</A>\r
+<BR>\r
+ </TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD><A HREF="compbio/runner/_NativeSpecHelper.html" title="class in compbio.runner">compbio.runner._NativeSpecHelper</A>\r
+<BR>\r
+ </TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD><A HREF="compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner">compbio.runner._SkeletalCommandBuilder</A>\r
+<BR>\r
+ </TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD><A HREF="compbio/ws/server/_WSLogger.html" title="class in compbio.ws.server">compbio.ws.server._WSLogger</A>\r
+<BR>\r
+ </TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD><A HREF="compbio/engine/Cleaner.html" title="class in compbio.engine">compbio.engine.Cleaner</A>\r
+<BR>\r
+ </TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD><A HREF="compbio/ws/server/SimpleWSPublisher.html" title="class in compbio.ws.server">compbio.ws.server.SimpleWSPublisher</A>\r
+<BR>\r
+ </TD>\r
+</TR>\r
+</TABLE>\r
+ \r
+<P>\r
+<A NAME="enum"><!-- --></A>\r
+<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
+<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
+<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
+<B>Deprecated Enums</B></FONT></TH>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD><A HREF="compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">compbio.engine.cluster.dundee._Queue</A>\r
+<BR>\r
+ </TD>\r
+</TR>\r
+</TABLE>\r
+ \r
+<P>\r
<A NAME="method"><!-- --></A>\r
<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
<B>Deprecated Methods</B></FONT></TH>\r
</TR>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD><A HREF="compbio/engine/client/Executable.html#getCreatedFiles()">compbio.engine.client.Executable.getCreatedFiles()</A>\r
+<BR>\r
+ </TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD><A HREF="compbio/engine/cluster/drmaa/ClusterSession.html#getJobStatus(int)">compbio.engine.cluster.drmaa.ClusterSession.getJobStatus(int)</A>\r
<BR>\r
</TD>\r
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