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remove old datamodel javadoc
[jabaws.git] / website / full_javadoc / index-files / index-21.html
diff --git a/website/full_javadoc/index-files/index-21.html b/website/full_javadoc/index-files/index-21.html
index 058a209..9c1f37e 100644 (file)
--- a/website/full_javadoc/index-files/index-21.html
+++ b/website/full_javadoc/index-files/index-21.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:50 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:36 BST 2011 -->\r
 <TITLE>\r
 V-Index\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-08-12">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">\r
 \r
@@ -82,6 +82,9 @@ function windowTitle()
 <A NAME="_V_"><!-- --></A><H2>\r
 <B>V</B></H2>\r
 <DL>\r
+<DT><A HREF="../compbio/data/msa/JABAService.html#V2_SERVICE_NAMESPACE"><B>V2_SERVICE_NAMESPACE</B></A> - \r
+Static variable in interface compbio.data.msa.<A HREF="../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A>\r
+<DD>&nbsp;\r
 <DT><A HREF="../compbio/engine/conf/RunnerConfigMarshaller.html#validate(javax.xml.validation.Validator, java.lang.String)"><B>validate(Validator, String)</B></A> - \r
 Static method in class compbio.engine.conf.<A HREF="../compbio/engine/conf/RunnerConfigMarshaller.html" title="class in compbio.engine.conf">RunnerConfigMarshaller</A>\r
 <DD>&nbsp;\r
@@ -94,7 +97,10 @@ Method in class compbio.metadata.<A HREF="../compbio/metadata/PresetManager.html
  object.\r
 <DT><A HREF="../compbio/metadata/RunnerConfig.html#validate()"><B>validate()</B></A> - \r
 Method in class compbio.metadata.<A HREF="../compbio/metadata/RunnerConfig.html" title="class in compbio.metadata">RunnerConfig</A>\r
-<DD>Validate the arguments\r
+<DD>Validate the value of the argument.\r
+<DT><A HREF="../compbio/ws/server/WSUtil.html#validateAAConInput(java.util.List)"><B>validateAAConInput(List&lt;FastaSequence&gt;)</B></A> - \r
+Static method in class compbio.ws.server.<A HREF="../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</A>\r
+<DD>&nbsp;\r
 <DT><A HREF="../compbio/engine/client/PathValidator.html#validateDirectory(java.lang.String)"><B>validateDirectory(String)</B></A> - \r
 Static method in class compbio.engine.client.<A HREF="../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</A>\r
 <DD>&nbsp;\r
@@ -122,23 +128,35 @@ Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structur
 <DT><A HREF="../compbio/data/_structure/JpredAnnotation.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
 Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structure/JpredAnnotation.html" title="enum in compbio.data._structure">JpredAnnotation</A>\r
 <DD>Returns the enum constant of this type with the specified name.\r
+<DT><A HREF="../compbio/data/sequence/ConservationMethod.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
+Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A>\r
+<DD>Returns the enum constant of this type with the specified name.\r
+<DT><A HREF="../compbio/data/sequence/DisorderMethod.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
+Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence">DisorderMethod</A>\r
+<DD>Returns the enum constant of this type with the specified name.\r
 <DT><A HREF="../compbio/data/sequence/Program.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A>\r
 <DD>Returns the enum constant of this type with the specified name.\r
+<DT><A HREF="../compbio/data/sequence/SMERFSConstraints.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
+Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A>\r
+<DD>Returns the enum constant of this type with the specified name.\r
 <DT><A HREF="../compbio/engine/client/Executable.ExecProvider.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
 Static method in enum compbio.engine.client.<A HREF="../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>\r
 <DD>Returns the enum constant of this type with the specified name.\r
 <DT><A HREF="../compbio/engine/cluster/dundee/_Queue.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
 Static method in enum compbio.engine.cluster.dundee.<A HREF="../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">_Queue</A>\r
-<DD>Returns the enum constant of this type with the specified name.\r
+<DD><B>Deprecated.</B>&nbsp;Returns the enum constant of this type with the specified name.\r
 <DT><A HREF="../compbio/metadata/JobStatus.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>\r
 <DD>Returns the enum constant of this type with the specified name.\r
 <DT><A HREF="../compbio/metadata/ValueConstrain.Type.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata">ValueConstrain.Type</A>\r
 <DD>Returns the enum constant of this type with the specified name.\r
-<DT><A HREF="../compbio/ws/client/Jws2Client.Services.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
-Static method in enum compbio.ws.client.<A HREF="../compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client">Jws2Client.Services</A>\r
+<DT><A HREF="../compbio/stat/servlet/util/StatCollection.Stattype.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
+Static method in enum compbio.stat.servlet.util.<A HREF="../compbio/stat/servlet/util/StatCollection.Stattype.html" title="enum in compbio.stat.servlet.util">StatCollection.Stattype</A>\r
+<DD>Returns the enum constant of this type with the specified name.\r
+<DT><A HREF="../compbio/ws/client/Services.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> - \r
+Static method in enum compbio.ws.client.<A HREF="../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>\r
 <DD>Returns the enum constant of this type with the specified name.\r
 <DT><A HREF="../compbio/data/_structure/JnetAnnotation.html#values()"><B>values()</B></A> - \r
 Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structure/JnetAnnotation.html" title="enum in compbio.data._structure">JnetAnnotation</A>\r
@@ -148,17 +166,29 @@ the order they are declared.
 Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structure/JpredAnnotation.html" title="enum in compbio.data._structure">JpredAnnotation</A>\r
 <DD>Returns an array containing the constants of this enum type, in
 the order they are declared.\r
+<DT><A HREF="../compbio/data/sequence/ConservationMethod.html#values()"><B>values()</B></A> - \r
+Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A>\r
+<DD>Returns an array containing the constants of this enum type, in
+the order they are declared.\r
+<DT><A HREF="../compbio/data/sequence/DisorderMethod.html#values()"><B>values()</B></A> - \r
+Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence">DisorderMethod</A>\r
+<DD>Returns an array containing the constants of this enum type, in
+the order they are declared.\r
 <DT><A HREF="../compbio/data/sequence/Program.html#values()"><B>values()</B></A> - \r
 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A>\r
 <DD>Returns an array containing the constants of this enum type, in
 the order they are declared.\r
+<DT><A HREF="../compbio/data/sequence/SMERFSConstraints.html#values()"><B>values()</B></A> - \r
+Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A>\r
+<DD>Returns an array containing the constants of this enum type, in
+the order they are declared.\r
 <DT><A HREF="../compbio/engine/client/Executable.ExecProvider.html#values()"><B>values()</B></A> - \r
 Static method in enum compbio.engine.client.<A HREF="../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>\r
 <DD>Returns an array containing the constants of this enum type, in
 the order they are declared.\r
 <DT><A HREF="../compbio/engine/cluster/dundee/_Queue.html#values()"><B>values()</B></A> - \r
 Static method in enum compbio.engine.cluster.dundee.<A HREF="../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">_Queue</A>\r
-<DD>Returns an array containing the constants of this enum type, in
+<DD><B>Deprecated.</B>&nbsp;Returns an array containing the constants of this enum type, in
 the order they are declared.\r
 <DT><A HREF="../compbio/metadata/JobStatus.html#values()"><B>values()</B></A> - \r
 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>\r
@@ -168,8 +198,12 @@ the order they are declared.
 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata">ValueConstrain.Type</A>\r
 <DD>Returns an array containing the constants of this enum type, in
 the order they are declared.\r
-<DT><A HREF="../compbio/ws/client/Jws2Client.Services.html#values()"><B>values()</B></A> - \r
-Static method in enum compbio.ws.client.<A HREF="../compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client">Jws2Client.Services</A>\r
+<DT><A HREF="../compbio/stat/servlet/util/StatCollection.Stattype.html#values()"><B>values()</B></A> - \r
+Static method in enum compbio.stat.servlet.util.<A HREF="../compbio/stat/servlet/util/StatCollection.Stattype.html" title="enum in compbio.stat.servlet.util">StatCollection.Stattype</A>\r
+<DD>Returns an array containing the constants of this enum type, in
+the order they are declared.\r
+<DT><A HREF="../compbio/ws/client/Services.html#values()"><B>values()</B></A> - \r
+Static method in enum compbio.ws.client.<A HREF="../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>\r
 <DD>Returns an array containing the constants of this enum type, in
 the order they are declared.\r
 </DL>\r