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-<A NAME="_H_"><!-- --></A><H2>\r
-<B>H</B></H2>\r
-<DL>\r
-<DT><A HREF="../compbio/engine/cluster/drmaa/StatisticManager.html#hasDump()"><B>hasDump()</B></A> - \r
-Method in class compbio.engine.cluster.drmaa.<A HREF="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</A>\r
-<DD> \r
-<DT><A HREF="../compbio/engine/cluster/drmaa/StatisticManager.html#hasExited()"><B>hasExited()</B></A> - \r
-Method in class compbio.engine.cluster.drmaa.<A HREF="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</A>\r
-<DD> \r
-<DT><A HREF="../compbio/data/sequence/Alignment.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A>\r
-<DD> \r
-<DT><A HREF="../compbio/data/sequence/AlignmentMetadata.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/AlignmentMetadata.html" title="class in compbio.data.sequence">AlignmentMetadata</A>\r
-<DD> \r
-<DT><A HREF="../compbio/data/sequence/FastaSequence.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>\r
-<DD> \r
-<DT><A HREF="../compbio/data/sequence/Range.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</A>\r
-<DD> \r
-<DT><A HREF="../compbio/data/sequence/Score.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A>\r
-<DD> \r
-<DT><A HREF="../compbio/data/sequence/ScoreManager.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A>\r
-<DD> \r
-<DT><A HREF="../compbio/data/sequence/ScoreManager.ScoreHolder.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence">ScoreManager.ScoreHolder</A>\r
-<DD> \r
-<DT><A HREF="../compbio/engine/client/CommandBuilder.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.engine.client.<A HREF="../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A>\r
-<DD> \r
-<DT><A HREF="../compbio/engine/client/RunConfiguration.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.engine.client.<A HREF="../compbio/engine/client/RunConfiguration.html" title="class in compbio.engine.client">RunConfiguration</A>\r
-<DD> \r
-<DT><A HREF="../compbio/engine/client/SkeletalExecutable.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.engine.client.<A HREF="../compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</A>\r
-<DD> \r
-<DT><A HREF="../compbio/engine/ClusterJobId.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.engine.<A HREF="../compbio/engine/ClusterJobId.html" title="class in compbio.engine">ClusterJobId</A>\r
-<DD> \r
-<DT><A HREF="../compbio/engine/conf/_Key.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.engine.conf.<A HREF="../compbio/engine/conf/_Key.html" title="class in compbio.engine.conf">_Key</A>\r
-<DD><B>Deprecated.</B> \r
-<DT><A HREF="../compbio/engine/FilePuller.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.engine.<A HREF="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A>\r
-<DD> \r
-<DT><A HREF="../compbio/engine/Job.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.engine.<A HREF="../compbio/engine/Job.html" title="class in compbio.engine">Job</A>\r
-<DD> \r
-<DT><A HREF="../compbio/metadata/ChunkHolder.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.metadata.<A HREF="../compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</A>\r
-<DD> \r
-<DT><A HREF="../compbio/metadata/Limit.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.metadata.<A HREF="../compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>\r
-<DD> \r
-<DT><A HREF="../compbio/metadata/Option.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.metadata.<A HREF="../compbio/metadata/Option.html" title="class in compbio.metadata">Option</A>\r
-<DD> \r
-<DT><A HREF="../compbio/metadata/Parameter.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.metadata.<A HREF="../compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A>\r
-<DD> \r
-<DT><A HREF="../compbio/metadata/Preset.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.metadata.<A HREF="../compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A>\r
-<DD> \r
-<DT><A HREF="../compbio/metadata/ValueConstrain.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.metadata.<A HREF="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</A>\r
-<DD> \r
-<DT><A HREF="../compbio/pipeline/_jpred/Hit.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A>\r
-<DD> \r
-<DT><A HREF="../compbio/pipeline/_jpred/PScore.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/PScore.html" title="class in compbio.pipeline._jpred">PScore</A>\r
-<DD> \r
-<DT><A HREF="../compbio/stat/collector/JobStat.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.stat.collector.<A HREF="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</A>\r
-<DD> \r
-<DT><A HREF="../compbio/stat/servlet/util/StatCollection.html#hashCode()"><B>hashCode()</B></A> - \r
-Method in class compbio.stat.servlet.util.<A HREF="../compbio/stat/servlet/util/StatCollection.html" title="class in compbio.stat.servlet.util">StatCollection</A>\r
-<DD> \r
-<DT><A HREF="../compbio/engine/FilePuller.html#hasMoreData()"><B>hasMoreData()</B></A> - \r
-Method in class compbio.engine.<A HREF="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A>\r
-<DD> \r
-<DT><A HREF="../compbio/data/sequence/FastaReader.html#hasNext()"><B>hasNext()</B></A> - \r
-Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence">FastaReader</A>\r
-<DD>\r
-<DT><A HREF="../compbio/engine/client/CommandBuilder.html#hasParam(java.lang.String)"><B>hasParam(String)</B></A> - \r
-Method in class compbio.engine.client.<A HREF="../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A>\r
-<DD> \r
-<DT><A HREF="../compbio/stat/collector/JobStat.html#hasResult()"><B>hasResult()</B></A> - \r
-Method in class compbio.stat.collector.<A HREF="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</A>\r
-<DD> \r
-<DT><A HREF="../compbio/engine/cluster/drmaa/StatisticManager.html#hasSignaled()"><B>hasSignaled()</B></A> - \r
-Method in class compbio.engine.cluster.drmaa.<A HREF="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</A>\r
-<DD> \r
-<DT><A HREF="../compbio/stat/collector/JobStat.html#hasStarted()"><B>hasStarted()</B></A> - \r
-Method in class compbio.stat.collector.<A HREF="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</A>\r
-<DD> \r
-<DT><A HREF="../compbio/engine/cluster/dundee/_Queue.html#hasTimeLimit()"><B>hasTimeLimit()</B></A> - \r
-Method in enum compbio.engine.cluster.dundee.<A HREF="../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">_Queue</A>\r
-<DD><B>Deprecated.</B> \r
-<DT><A HREF="../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred"><B>Hit</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD> <DT><A HREF="../compbio/pipeline/_jpred/Hit.html#Hit()"><B>Hit()</B></A> - \r
-Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A>\r
-<DD> \r
-<DT><A HREF="../compbio/pipeline/_jpred/Hit.EvalueComporator.html" title="class in compbio.pipeline._jpred"><B>Hit.EvalueComporator</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD> <DT><A HREF="../compbio/pipeline/_jpred/Hit.EvalueComporator.html#Hit.EvalueComporator()"><B>Hit.EvalueComporator()</B></A> - \r
-Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/Hit.EvalueComporator.html" title="class in compbio.pipeline._jpred">Hit.EvalueComporator</A>\r
-<DD> \r
-<DT><A HREF="../compbio/pipeline/_jpred/Hit.NumberComporator.html" title="class in compbio.pipeline._jpred"><B>Hit.NumberComporator</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD> <DT><A HREF="../compbio/pipeline/_jpred/Hit.NumberComporator.html#Hit.NumberComporator()"><B>Hit.NumberComporator()</B></A> - \r
-Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/Hit.NumberComporator.html" title="class in compbio.pipeline._jpred">Hit.NumberComporator</A>\r
-<DD> \r
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