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[jabaws.git] / website / index.html

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 <p style="color:black; font-weight:normal; text-align:left;"><span style="border-bottom:dotted 1px #666" title="JAva Bioinformatics Analysis Web Services">JABAWS</span> is  free software which provides web services for prediction of protein disorder, multiple sequence alignment and amino acid conservation conveniently packaged to run on your local computer, server or cluster. JABAWS v2.0 introduces protein disorder prediction services based on <a href="http://dis.embl.de/">DisEMBL</a>, <a href="http://iupred.enzim.hu">IUPred</a>, <a href="http://www.strubi.ox.ac.uk/RONN">Ronn</a>, <a href="http://globplot.embl.de/">GlobPlot</a> and protein sequence alignment conservation measures calculated by <a href="http://www.compbio.dundee.ac.uk/aacon">AACon</a>. A new multiple sequence alignment service for <a href="http://www.clustal.org/omega">Clustal Omega</a> is also provided, in addition to standard JABAWS:MSA services for <a href="http://www.clustal.org/clustal2">Clustal W</a>, <a href=\r
 "http://align.bmr.kyushu-u.ac.jp/mafft/software/">MAFFT</a>, <a href="http://www.drive5.com/muscle">MUSCLE</a>, <a href=\r
 "http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"> TCOFFEE</a> and <a href="http://probcons.stanford.edu/">PROBCONS</a>. \r
-<span style="color:black; font-weight:normal; text-align:left;">JABA Web Services can be accessed from the <a href="http://www.jalview.org">Jalview</a> desktop application and provide multiple alignment and sequence analysis calculations limited only by your own local computing resources.</span></p>\r
-<p>Please note that JABAWS 2 is supported by Jalview 2.6.1  onwards, but the disorder prediction, Clustal Omega and AACon services will  only be accessible in Jalview 2.8 (due for release in January 2012.)  In the meantime you can access all JABAWS2  services through the JABAWS command-line client.</p>\r
+<span style="color:black; font-weight:normal; text-align:left;">JABA Web Services can be accessed from the <a href="http://www.jalview.org">Jalview</a> desktop application and provide multiple alignment and sequence analysis calculations limited only by your own local computing resources.<br />\r
+<br />\r
+</span>Please note that JABAWS 2 is supported by Jalview 2.6.1 onwards, but the   disorder prediction, Clustal Omega and AACon services will only be accessible in   Jalview 2.8 (due for release in January 2012). In the meantime you can access   all JABAWS2 services through the JABAWS command-line client.</p>\r
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   <strong>The Client: </strong>\r
       Command Line Client <a href="http://www.compbio.dundee.ac.uk/download/get?id=min-jaba-client-2.0.jar">binary</a> | <a href=\r
-"http://www.compbio.dundee.ac.uk/download/get?id=jaba-client-source-2.0.jar">source</a> \r
+"http://www.compbio.dundee.ac.uk/download/get?id=jaba-client-src-2.0.jar">source</a> \r
          <!-- <li><a href="http://www.jalview.org/download.html">Jalview</a> (18M)</li> -->\r
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-<div id="copyright">Last update: 16 September 2011<br />\r
+<div id="copyright">Last update: 10 December 2011<br />\r
  This site is best viewed in Firefox 3.6, Google Chrome 10, Internet Explorer 8 or above </div>\r
 </div>\r
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