web pages url updates

[jabaws.git] / website / man_client.html

diff --git a/website/man_client.html b/website/man_client.html
index 5738114..d84f2a6 100644 (file)
--- a/website/man_client.html
+++ b/website/man_client.html
@@ -16,7 +16,7 @@
 <div id="banner">\r
 <table> \r
 <tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif"  alt="University of Dundee" width="158" height="90" class="logo"  title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
-<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0:Disorder" width="353" height="67" title="JABAWS-2.0:Disorder"/></td>\r
+<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0" title="Java Bioinformatics Analysis Web Services version 2.0"/></td>\r
 <td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
 </tr>\r
 </table>\r
@@ -29,6 +29,7 @@
        <div id="submenu">\r
                <a href="man_about.html">About</a>\r
                <a href="man_servervm.html" title="JABAWS Server as Virtual Appliance">Server VA</a>\r
+               <a href="man_awscloud.html" title="JABAWS Server in the Amazon EC2 Cloud">Server in the Cloud</a>\r
                <a href="man_serverwar.html" title="JABAWS Server as Web Application aRchive">Server WAR</a>\r
                <a href="man_configuration.html" >Server<br/>\r
                Configuration</a>\r
@@ -38,9 +39,10 @@
                JABAWS</a>      \r
                <a href="man_server_dev.html" >JABAWS Development</a>\r
        </div>\r
-<a href="download.html">Download</a> \r
-<a href="contacts.html">Contact Us</a>\r
+<a href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
 <a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
+<a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r
 \r
@@ -49,10 +51,10 @@
 <h2 id="headtitle">JABAWS MANUAL</h2>\r
 \r
 <h2><a name="usingcclient" id="usingcclient"></a>JABAWS Command Line Client Usage </h2>\r
-<p>The command line client comes as a part of <a href="download.html"> client package</a> which you are welcome to download. The command line client can be used to align sequences using any of JABAWS supported web services. The client is OS independent and supports most of the functions which can be accessed programmatically via <a href="dm_javadoc/index.html">JABAWS API</a>. Using this client you could align sequences using presets or custom parameters, please see examples of this below. Here is the list of options supported by the command line client. </p>\r
+<p>The command line client comes as a part of <a href="http://www.compbio.dundee.ac.uk/download"> client package</a> which you are welcome to download. The command line client can be used to align sequences using any of JABAWS supported web services. The client is OS independent and supports most of the functions which can be accessed programmatically via <a href="dm_javadoc/index.html">JABAWS API</a>. Using this client you could align sequences using presets or custom parameters, please see examples of this below. Here is the list of options supported by the command line client. </p>\r
 <span class="code"><strong>Usage:</strong> java -jar &lt;path_to_jar_file&gt; -h=host_and_context -s=serviceName ACTION [OPTIONS]<br />\r
 -h=&lt;host_and_context&gt; - a full URL to the JABAWS web server including context path e.g. http://10.31.10.159:8080/ws<br />\r
--s=&lt;ServiceName&gt; - one of [MafftWS, MuscleWS, ClustalWS, TcoffeeWS, ProbconsWS]\r
+-s=&lt;ServiceName&gt; - one of [MafftWS, MuscleWS, ClustalWS, ClustalOWS, TcoffeeWS, ProbconsWS, AAConWS, JronnWS, DisemblWS, GlobPlotWS, IUPredWS]\r
 </p>\r
 <br />\r
 <strong>ACTIONS:</strong><br />\r
@@ -90,7 +92,7 @@ Please note that -r and -f options cannot be used together. Alignment is done wi
 </div>\r
 \r
 <!-- content end-->\r
-<div id="copyright">Last update: 1 April 2011<br />\r
+<div id="copyright">Last update: 16 September 2011<br />\r
  Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of\r
 Dundee, UK</div>\r
 </div>\r