web site update new pages for awss beanstalk deployment

[jabaws.git] / website / man_dev.html

diff --git a/website/man_dev.html b/website/man_dev.html
index 2abadaf..5180eec 100644 (file)
--- a/website/man_dev.html
+++ b/website/man_dev.html
@@ -29,6 +29,7 @@
        <div id="submenu">\r
                <a href="man_about.html">About</a>\r
                <a href="man_servervm.html" title="JABAWS Server as Virtual Appliance">Server VA</a>\r
+               <a href="man_awscloud.html" title="JABAWS Server in the Amazon EC2 Cloud">Server in the Cloud</a>\r
                <a href="man_serverwar.html" title="JABAWS Server as Web Application aRchive">Server WAR</a>\r
                <a href="man_configuration.html" >Server<br/>\r
                Configuration</a>\r
@@ -39,8 +40,9 @@
                <a href="man_server_dev.html" >JABAWS Development</a>\r
        </div>\r
 <a href="download.html">Download</a> \r
-<a href="contacts.html">Contact Us</a>\r
 <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
+<a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+<a href="contacts.html">Contact Us</a>\r
 <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 \r
 </div>\r
@@ -152,13 +154,14 @@
 <ul>\r
   <li><a href="http://www.compbio.dundee.ac.uk/jabaws/IUPredWS?wsdl">IUPredWS</a> (http://www.compbio.dundee.ac.uk/jabaws/IUPredWS?wsdl) </li>\r
   <li><a href="http://www.compbio.dundee.ac.uk/jabaws/GlobPlotWS?wsdl">GlobPlotWS</a> (http://www.compbio.dundee.ac.uk/jabaws/GlobPlotWS?wsdl) </li>\r
-  <li><a href="http://www.compbio.dundee.ac.uk/jabaws/DisEMBLWS?wsdl">DisEMBLWS</a> (http://www.compbio.dundee.ac.uk/jabaws/DisEMBLWS?wsdl) </li>\r
+  <li><a href="http://www.compbio.dundee.ac.uk/jabaws/DisemblWS?wsdl">DisemblWS</a> (http://www.compbio.dundee.ac.uk/jabaws/DisemblWS?wsdl) </li>\r
   <li><a href="http://www.compbio.dundee.ac.uk/jabaws/JronnWS?wsdl">JronnWS</a> (http://www.compbio.dundee.ac.uk/jabaws/JronnWS?wsdl) </li>\r
   </ul>\r
 <p>Amino acid conservation service</p>\r
 <ul>\r
   <li><a href="http://www.compbio.dundee.ac.uk/jabaws/AAConWS?wsdl">AAConWS</a> (http://www.compbio.dundee.ac.uk/jabaws/AAConWS?wsdl) </li>\r
-</ul>\r
+  </ul>\r
+<p>Please replace <span class="hightlight">http://www.compbio.dundee.ac.uk/</span> with your JABAWS instance host name, and <span class="hightlight">jabaws</span> with your JABAWS context name to access your local version of JABAWS web services. For example <span class="hightlight">http://localhost:8080/jabaws</span> would be a valid URL for the default Apache-Tomcat installation and jabaws.war file deployment. </p>\r
 <h3><a name="defalign" id="defalign"></a>Aligning sequences </h3>\r
 <p>Given that <span class="hightlight">msaws</span> is web service proxy, created as described in &quot;Connecting to JABAWS&quot; section, the actual alignment can be obtained as follows: </p>\r
 <p class="code">1) List&lt;FastaSequence&gt; fastalist = SequenceUtil.readFasta(new FileInputStream(file));<br />\r
@@ -351,7 +354,7 @@ For a more detailed description of all available types and their functions pleas
 </div>\r
 \r
 <!-- content end-->\r
-<div id="copyright">Last update: 1 April 2011<br />\r
+<div id="copyright">Last update: 16 September 2011<br />\r
  Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of\r
 Dundee, UK</div>\r
 </div>\r