web pages url updates

[jabaws.git] / website / manual_qs_va.html

diff --git a/website/manual_qs_va.html b/website/manual_qs_va.html
index dac6368..cdae95a 100644 (file)
--- a/website/manual_qs_va.html
+++ b/website/manual_qs_va.html
@@ -14,7 +14,7 @@
 <div id="banner">\r
 <table> \r
 <tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif"  alt="University of Dundee" width="158" height="90" class="logo"  title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
-<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0:Disorder" width="353" height="67" title="JABAWS-2.0:Disorder"/></td>\r
+<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0" title="Java Bioinformatics Analysis Web Services version 2.0"/></td>\r
 <td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
 </tr>\r
 </table>\r
@@ -24,9 +24,10 @@
 <a href="index.html">Home</a>\r
     <a class="selected" href="quick_start.html">Getting Started</a> \r
     <a href="man_about.html">Manual</a> \r
-       <a href="download.html">Download</a>\r
-       <a href="contacts.html">Contact Us</a>\r
+       <a href="http://www.compbio.dundee.ac.uk/download">Download</a>\r
     <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
+        <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
+       <a href="contacts.html">Contact Us</a>\r
     <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
 <!-- panel end-->\r
 <div id="content">\r
@@ -45,7 +46,11 @@
     <td><a href="manual_qs_va.html#qsc">JABAWS Virtual Appliance (VA)</a></td>\r
 </tr>\r
 <tr>\r
-       <td>Running JABAWS for my group, lab, or organization</td>\r
+  <td>Running JABAWS  on the <strong>cloud</strong>, for one or many users</td>\r
+  <td><a href="man_awscloud.html">JABAWS on the Amazon cloud </a></td>\r
+</tr>\r
+<tr>\r
+       <td>Running JABAWS for my group, lab, or organization on the <strong>local</strong> infrastructure </td>\r
     <td><a href="manual_qs_war.html#qsc">JABAWS Web Application aRchive (WAR)</a></td>\r
 </tr>\r
 <tr>\r
@@ -56,7 +61,7 @@
 \r
 <a name="qsc"/>\r
 <h3>Running JABAWS on your local machine</h3>\r
-<ul>  <li>Download <a href="http://www.compbio.dundee.ac.uk/jabaws/archive/jabaws-vm.zip">JABAWS Virtual Appliance</a> (520M) </li>\r
+<ul>  <li>Download <a href="http://www.compbio.dundee.ac.uk/download/get?id=jabaws-vm.zip">JABAWS Virtual Appliance</a> (520M) </li>\r
 </ul>\r
 <p>The Virtual Appliance (VA) package allows you to run a JABAWS server installed on TurnKey Linux as a virtual machine on your laptop or desktop computer. A <a href="man_servervm.html#whenvm">complete guide to the JABAWS VA</a> is given in the manual, but for the impatient, a brief instructions are given below:\r
 \r
@@ -68,9 +73,9 @@
 <p>If you work on Mac do the same using <a href="http://www.vmware.com/products/fusion/overview.html">VMware Fusion</a>, or for free alternative use a WAR JABAWS package. </p>\r
 <div id="testing_jabaws">\r
 <h3>Testing</h3>\r
-<p>The easiest way to test that your JABAWS Virtual appliance is working is to use Jalview.</p>\r
-<ol>\r
-  <li>Launch the desktop version of <a href="http://www.jalview.org/download.html">Jalview</a></li>\r
+<p>To check that your JABAWS virtual appliance is working visit the Services Status page available from the main JABAWS menu. For this enter the JABAWS URL for your new server into a web browser. This is shown once the appliance is booted up. </p>\r
+<p>Alternatively you can use Jalview to complete the testing. </p>\r
+<ol><li>Launch the desktop version of <a href="http://www.jalview.org/download.html">Jalview</a></li>\r
   <li>Open the Jalview desktop's preferences panel (from the Tools-&gt;Preferences menu option), select the <span class="hightlight">Webservices</span> panel and press the <span class="hightlight">New Service URL</span> button.</li>\r
   <li>Enter the JABAWS URL for your new server. This is shown once the appliance is booted up.</li>\r
 </ol>\r
@@ -79,7 +84,7 @@
 <!-- about end-->\r
 </div>\r
 <!-- content end--> \r
-<div id="copyright">Last update: 1 August 2011<br/>\r
+<div id="copyright">Last update: 16 September 2011<br/>\r
 Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of Dundee, UK</div>\r
 </div><!-- wrapper end-->\r
 </div> <!-- page end-->\r