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<title>Java Bioinformatics Analyses Web Services (JABAWS) manual - getting started</title>\r
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- <td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif" width="158" height="90" alt="University of Dundee" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
- <td class="bg"><img src="images/jabaws25.png" width="263" height="60" alt="JABAWS-2.1" title="Java Bioinformatics Analysis Web Services version 2.1"/></td>\r
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+<td class="bg"><img src="images/jabaws21.png" width="256" height="67" alt="JABAWS-2.1" title="Java Bioinformatics Analysis Web Services version 2.1"/></td>\r
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- <a href="contacts.html">Contact Us</a>\r
- <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
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+ <a class="newpressed" href="quick_start.html">Getting Started</a> \r
+ <a class="newa" href="man_about.html">Manual</a> \r
+ <a class="newa" href="http://www.compbio.dundee.ac.uk/download">Download</a> \r
+ <a class="newa" href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
+ <a class="newa" href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
+ <a class="newa" href="contacts.html">Contact Us</a>\r
+ <a class="newa" href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
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<div id="content">\r
<h2 id="headtitle">Getting Started</h2>\r
<h3><a name="whichjaba" id="whichjaba"></a>Choose a JABAWS distribution</h3>\r
</p>\r
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<ol>\r
-<li>Download the <a href="http://www.compbio.dundee.ac.uk/download">JABAWS WAR for your platform </a></li>\r
- <li>Download and install <a href="http://tomcat.apache.org/download-70.cgi">Apache-Tomcat</a>.<br/>\r
- <span class="hightlight">You will need at least version 5.5 of Tomcat (we would recommend version 7.0) and at least version 1.6 (i.e. JAVA 6) of Java.</span></li>\r
- <li>Drop the JABAWS WAR file into <span class="hightlight">tomcat/webapps</span> directory.</li>\r
- <li>(Re)start the Tomcat.</li>\r
- <li>Once the tomcat has started, it should automatically unpack the WAR into the webapps directory (if it doesn't, then you'll need to do this manually, it's just a zip archive in the end).</li>\r
- <li> If you are on Mac or other unix-like architecture with GNU compilers available or you'd like to get a maximum performance </li>\r
- <ul><li> <span class="hightlight">cd</span> to <span class="hightlight">webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./compilebin.sh </span> script to compile all binaries JABAWS depends on. </li>\r
- </ul>\r
+ <li>Download the <a href="http://www.compbio.dundee.ac.uk/download">JABAWS WAR for your platform </a></li>\r
+ <li>Download and install <a href="http://tomcat.apache.org/download-70.cgi">Apache-Tomcat</a>.<br/>\r
+ <span class="hightlight">You will need at least Tomcat version 5.5 of (we would recommend version 7.0) and at least Java 1.6 (i.e. JAVA 6).</span>\r
+ </li>\r
+ <li>Drop the JABAWS WAR file into <span class="hightlight">tomcat/webapps</span> directory.</li>\r
+ <li>(Re)start the Tomcat.</li>\r
+ <li>Once the tomcat has started, it should automatically unpack the WAR into the webapps directory (if it doesn't, then you'll need to do this manually, it's just a zip archive in the end).</li>\r
+ <li> If you are on Mac or other unix-like architecture with GNU compilers available or you'd like to get a maximum performance <br/>\r
+ <span class="hightlight">cd</span> to <span class="hightlight">webapps/jabaws/binaries/src/</span> \r
+ and execute <span class="hightlight">./compilebin.sh</span> script to compile all binaries JABAWS depends on.\r
+ </li>\r
</ol> \r
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<h3>Testing</h3>\r
git://source.jalview.org / jabaws.git / blobdiff