web pages url updates

[jabaws.git] / website / manual_qs_war.html

diff --git a/website/manual_qs_war.html b/website/manual_qs_war.html
index 9ce3951..e3c0cc8 100644 (file)
--- a/website/manual_qs_war.html
+++ b/website/manual_qs_war.html
@@ -14,7 +14,7 @@
 <div id="banner">\r
 <table> \r
 <tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif"  alt="University of Dundee" width="158" height="90" class="logo"  title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
-<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0:Disorder" width="353" height="67" title="JABAWS-2.0:Disorder"/></td>\r
+<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0" title="Java Bioinformatics Analysis Web Services version 2.0"/></td>\r
 <td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
 </tr>\r
 </table>\r
@@ -25,9 +25,9 @@
 <a href="index.html">Home</a>\r
     <a class="selected" href="quick_start.html">Getting Started</a> \r
     <a href="man_about.html">Manual</a> \r
-       <a href="download.html">Download</a>\r
+       <a href="http://www.compbio.dundee.ac.uk/download">Download</a>\r
     <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
-       <a href="ServiceStatus" title="JABAWS webservices status">Services Status</a>\r
+        <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
        <a href="contacts.html">Contact Us</a>\r
     <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 \r
@@ -69,26 +69,21 @@
 <p>This is for anyone who wants to run JABAWS for their group, lab or organization, or wants to enable their local JABA server to use the cluster or perform very large tasks.</p>\r
 \r
 <ol>\r
-<li>Download the <a href="http://www.compbio.dundee.ac.uk/jabaws/download.html">JABAWS WAR for your platform </a></li>\r
+<li>Download the <a href="http://www.compbio.dundee.ac.uk/download">JABAWS WAR for your platform </a></li>\r
   <li>Download and install <a href="http://tomcat.apache.org/download-70.cgi">Apache-Tomcat</a>.<br/>\r
    <span class="hightlight">You will need at least version 5.5 of Tomcat (we would recommend version 7.0) and at least version 1.6 (i.e. JAVA 6) of Java.</span></li>\r
   <li>Drop the JABAWS WAR file into <span class="hightlight">tomcat/webapps</span> directory.</li>\r
   <li>(Re)start the Tomcat.</li>\r
   <li>Once the tomcat has started, it should automatically unpack the WAR into the webapps directory (if it doesn't, then you'll need to do this manually, it's just a zip archive in the end).</li>\r
-  <li> You then need to complete the installation of the executable binaries (this is optional if you use 32 bit version of Linux):</li>\r
-   <ul>\r
-     <li>If you are on Linux or Mac (OSX intel Mac only) <br/>\r
-       <span class="hightlight">cd</span> to <span class="hightlight"> webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./setexecflag.sh </span> script to ensure the JABAWS binaries can be executed. </li>\r
-     <li>If you are on other unix-like architecture with gnu compilers available or you'd like to get a maximum performance:</li>\r
-     <li> <span class="hightlight">cd</span> to <span class="hightlight">webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./compilebin.sh  </span> script to compile all binaries JABAWS depends on. </li>\r
-     <li><span class="hightlight">cd</span> to <span class="hightlight"> webapps/jabaws/binaries/src/ </span>and execute <span class="hightlight">./setexecflag.sh </span> script. </li>\r
-   </ul>\r
+  <li> If you are on Mac or other unix-like architecture with GNU compilers available or you'd like to get a maximum performance </li>\r
+   <ul><li> <span class="hightlight">cd</span> to <span class="hightlight">webapps/jabaws/binaries/src/</span> and execute <span class="hightlight">./compilebin.sh  </span> script to compile all binaries JABAWS depends on. </li>\r
+     </ul>\r
 </ol> \r
 \r
 <h3>Testing</h3>\r
 <p>You can test that your JABAWS server is working in several ways.</p>\r
 <ol>\r
-<li>Visit Services Status page available from the main menu using your web browser.</li>\r
+<li>Visit Services Status page available from the JABAWS main page using your web browser.</li>\r
 \r
 <li>If you are working on the command line, then use the command line client shipped with the JABAWS war to test it by running:\r
   <span class="code">java -jar &lt;Path to tomcat WebApp directory&gt;/jabaws/WEB-INF/lib/jaba-client.jar -h=http://localhost:8080/jabaws</span>\r