JWS-109 Automatic relative path refactoring by IntelliJ. Some paths other relative...

[jabaws.git] / website / v_2_1_0 / man_dev.html

diff --git a/website/v_2_1_0/man_dev.html b/website/v_2_1_0/man_dev.html
index 01a60e8..bee2443 100644 (file)
--- a/website/v_2_1_0/man_dev.html
+++ b/website/v_2_1_0/man_dev.html
@@ -17,9 +17,9 @@
 <div id="banner">
 <table>
   <tr>
-    <td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif" width="158" height="90" alt="University of Dundee" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>
-    <td class="bg"><img src="images/jabaws21.png" width="256" height="67" alt="JABAWS-2.1" title="Java Bioinformatics Analysis Web Services version 2.1"/></td>
-    <td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>
+    <td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="../images/uod_lt_long.gif" width="158" height="90" alt="University of Dundee" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>
+    <td class="bg"><img src="../images/jabaws21.png" width="256" height="67" alt="JABAWS-2.1" title="Java Bioinformatics Analysis Web Services version 2.1"/></td>
+    <td class="bg"><img src="../images/banner_right.png" alt="Disorder" width="200" height="80"/></td>
   </tr>
 </table>
 </div>
@@ -80,7 +80,7 @@
   Limit limit = getLimit(String name)<br />
   LimitsManager lm = getLimits()<br />
   PresetManager pm = getPresets()</span></p>
-<p>Please refer to a <a href="dm_javadoc/compbio/data/msa/MsaWS.html">data model  javadoc</a> for a detailed description of each methods. </p>
+<p>Please refer to a <a href="../dm_javadoc/compbio/data/msa/MsaWS.html">data model  javadoc</a> for a detailed description of each methods. </p>
 <h3><a name="templatestr" id="templatestr"></a>Structure of the template command line client</h3>
 <table width="100%" border="1">
   <tr>
@@ -105,7 +105,7 @@
   </tr>
 </table>
 <p>Additional utility libraries that this client depend upon is the compbio-util-1.3.jar and compbio-annotation-1.0.jar. <br />
-  Please refer to a <a href="dm_javadoc/index.html">data model javadoc</a> for a detailed description of each class and its methods. </p>
+  Please refer to a <a href="../dm_javadoc/index.html">data model javadoc</a> for a detailed description of each class and its methods. </p>
 
 
 <h3><a name="connectto" id="connectto"></a>Connecting to JABAWS</h3>
@@ -156,7 +156,7 @@ web service deployed in the University of Dundee. </p>
 <p>
        Where Services is enumeration of JABAWS web services. All JABAWS multiple sequence alignment methods confirm to 
        MsaWS specification, thus from the caller point of view all JABAWS web services can be represented by MsaWS 
-       interface. The full documentation of MsaWS functions is available from the <a href="dm_javadoc/compbio/data/msa/MsaWS.html">javadoc</a>.
+       interface. The full documentation of MsaWS functions is available from the <a href="../dm_javadoc/compbio/data/msa/MsaWS.html">javadoc</a>.
 </p>
 
 
@@ -255,7 +255,7 @@ calculation has been completed before accessing the results.        You can do it like
   The names of all the parameters supported by a web service e.g. &quot;PAM300&quot; can be obtained 
   using <span class="hightlight">options.getArguments() </span>method. Further details on the methods 
   available from <span class="hightlight">RunnerConfig</span> object are available from the 
-  <a href="dm_javadoc/index.html">javadoc</a>. </p>
+  <a href="../dm_javadoc/index.html">javadoc</a>. </p>
 <h3><a name="writingaltofile" id="writingaltofile"></a>Writing alignments to a file</h3>
 <p>There is a utility method in the client library that does exactly that. </p>
 <p> <span class="code">Alignment alignment = align(...) <br />
@@ -401,7 +401,7 @@ public class Example {
        }
 }
 </pre>
-For a more detailed description of all available types and their functions please refer to the <a href="dm_javadoc/index.html">data model javadoc</a>.
+For a more detailed description of all available types and their functions please refer to the <a href="../dm_javadoc/index.html">data model javadoc</a>.
 <h3><a name="buildart" id="buildart"></a>Building web services artifacts</h3>
 <p>
 JABAWS are the standard <a href="http://jax-ws.java.net/">JAX-WS</a> SOAP web services, which are <a href="http://www.ws-i.org/">WS-I</a>