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Add some recommended attributes to javac tasks
[jabaws.git] / wsbuild.log
diff --git a/wsbuild.log b/wsbuild.log
index 5b45197..9ab6983 100644 (file)
--- a/wsbuild.log
+++ b/wsbuild.log
@@ -6,16 +6,19 @@ build-server:
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/ClustalWS_schema1.xsd
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/DisemblWS.wsdl
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/DisemblWS_schema1.xsd
+   [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/GLprobsWS.wsdl
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/GlobPlotWS.wsdl
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/GlobPlotWS_schema1.xsd
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/IUPredWS.wsdl
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/IUPredWS_schema1.xsd
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JpredWS.wsdl
-   [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JpredWS_schema1.xsd
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JronnWS.wsdl
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/JronnWS_schema1.xsd
+   [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MSAprobsWS.wsdl
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MafftWS.wsdl
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MafftWS_schema1.xsd
+   [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MsaWS.wsdl
+   [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MsaWS_schema1.xsd
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MuscleWS.wsdl
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd
    [delete] Deleting /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource/RNAalifoldWS.wsdl
@@ -246,6 +249,228 @@ build-server:
     [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
     [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
     [wsgen] Note:      ap round: 2
+    [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.MSAprobsWS
+    [wsgen] Note:      ap round: 1
+    [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
+    [wsgen] [should process method: align hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: true]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
+    [wsgen] [should process method: customAlign hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: true]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
+    [wsgen] [should process method: presetAlign hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: true]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
+    [wsgen] [should process method: getResult hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: true]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getResult(java.lang.String)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
+    [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
+    [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
+    [wsgen] [should process method: cancelJob hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
+    [wsgen] [should process method: getJobStatus hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
+    [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
+    [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
+    [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getRunnerOptions()]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
+    [wsgen] [should process method: getPresets hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getPresets()]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
+    [wsgen] [should process method: getLimit hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
+    [wsgen] [should process method: getLimits hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getLimits()]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
+    [wsgen] compbio/data/msa/jaxws/Align.java
+    [wsgen] compbio/data/msa/jaxws/AlignResponse.java
+    [wsgen] compbio/data/msa/jaxws/CancelJob.java
+    [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
+    [wsgen] compbio/data/msa/jaxws/CustomAlign.java
+    [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
+    [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetLimit.java
+    [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetLimits.java
+    [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetPresets.java
+    [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetResult.java
+    [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
+    [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
+    [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
+    [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
+    [wsgen] compbio/data/msa/jaxws/PresetAlign.java
+    [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
+    [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
+    [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
+    [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
+    [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
+    [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
+    [wsgen] Note:      ap round: 2
+    [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.GLprobsWS
+    [wsgen] Note:      ap round: 1
+    [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
+    [wsgen] [should process method: align hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: true]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: align(java.util.List<compbio.data.sequence.FastaSequence>)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.Align]
+    [wsgen] [should process method: customAlign hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: true]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: customAlign(java.util.List<compbio.data.sequence.FastaSequence>,java.util.List<compbio.metadata.Option<T>>)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.CustomAlign]
+    [wsgen] [should process method: presetAlign hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: true]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: presetAlign(java.util.List<compbio.data.sequence.FastaSequence>,compbio.metadata.Preset<T>)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.PresetAlign]
+    [wsgen] [should process method: getResult hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: true]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getResult(java.lang.String)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.MsaWS<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetResult]
+    [wsgen] [ProcessedMethods Interface: compbio.data.msa.JABAService]
+    [wsgen] [ProcessedMethods Interface: compbio.data.msa.JManagement]
+    [wsgen] [should process method: cancelJob hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: cancelJob(java.lang.String)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.CancelJob]
+    [wsgen] [should process method: getJobStatus hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getJobStatus(java.lang.String)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetJobStatus]
+    [wsgen] [should process method: pullExecStatistics hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: pullExecStatistics(java.lang.String,long)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.JManagement]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.PullExecStatistics]
+    [wsgen] [ProcessedMethods Interface: compbio.data.msa.Metadata<T>]
+    [wsgen] [should process method: getRunnerOptions hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getRunnerOptions()]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetRunnerOptions]
+    [wsgen] [should process method: getPresets hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getPresets()]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetPresets]
+    [wsgen] [should process method: getLimit hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getLimit(java.lang.String)]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimit]
+    [wsgen] [should process method: getLimits hasWebMethods: false ]
+    [wsgen] [endpointReferencesInterface: true]
+    [wsgen] [declaring class has WebSevice: false]
+    [wsgen] [returning: true]
+    [wsgen] [WrapperGen - method: getLimits()]
+    [wsgen] [method.getDeclaringType(): compbio.data.msa.Metadata<T>]
+    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetLimits]
+    [wsgen] compbio/data/msa/jaxws/Align.java
+    [wsgen] compbio/data/msa/jaxws/AlignResponse.java
+    [wsgen] compbio/data/msa/jaxws/CancelJob.java
+    [wsgen] compbio/data/msa/jaxws/CancelJobResponse.java
+    [wsgen] compbio/data/msa/jaxws/CustomAlign.java
+    [wsgen] compbio/data/msa/jaxws/CustomAlignResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetJobStatus.java
+    [wsgen] compbio/data/msa/jaxws/GetJobStatusResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetLimit.java
+    [wsgen] compbio/data/msa/jaxws/GetLimitResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetLimits.java
+    [wsgen] compbio/data/msa/jaxws/GetLimitsResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetPresets.java
+    [wsgen] compbio/data/msa/jaxws/GetPresetsResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetResult.java
+    [wsgen] compbio/data/msa/jaxws/GetResultResponse.java
+    [wsgen] compbio/data/msa/jaxws/GetRunnerOptions.java
+    [wsgen] compbio/data/msa/jaxws/GetRunnerOptionsResponse.java
+    [wsgen] compbio/data/msa/jaxws/JobSubmissionExceptionBean.java
+    [wsgen] compbio/data/msa/jaxws/LimitExceededExceptionBean.java
+    [wsgen] compbio/data/msa/jaxws/PresetAlign.java
+    [wsgen] compbio/data/msa/jaxws/PresetAlignResponse.java
+    [wsgen] compbio/data/msa/jaxws/PullExecStatistics.java
+    [wsgen] compbio/data/msa/jaxws/PullExecStatisticsResponse.java
+    [wsgen] compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.java
+    [wsgen] compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.java
+    [wsgen] compbio/data/msa/jaxws/WrongParameterExceptionBean.java
+    [wsgen] Note:      ap round: 2
     [wsgen] command line: wsgen -classpath /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-beanutils-1.7.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-collections-3.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-lang-2.3.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/commons-logging-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-annotations-1.0.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-ga-1.1.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/compbio-util-1.4.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/derby-10.8.2.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/displaytag-export-poi-1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/drmaa.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/itext-1.4.7.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/jstl-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/log4j-1.2.15.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/poi-3.2-FINAL-20081019.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/standard-1.1.2.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-api.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-rt.jar:/home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/lib/webservices-tools.jar -d /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/WEB-INF/classes -Xendorsed -keep -wsdl -r /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices/compbio/ws/server/resource -s /home/asherstnev/Projects/Java.projects/jabaws/secure-git/develop/webservices -verbose compbio.ws.server.ClustalWS
     [wsgen] Note:      ap round: 1
     [wsgen] [ProcessedMethods Interface: compbio.data.msa.MsaWS<T>]
@@ -1144,13 +1369,6 @@ build-server:
     [wsgen] [WrapperGen - method: getSupportedServices()]
     [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
     [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetSupportedServices]
-    [wsgen] [should process method: getNonoperatedServices hasWebMethods: false ]
-    [wsgen] [endpointReferencesInterface: true]
-    [wsgen] [declaring class has WebSevice: true]
-    [wsgen] [returning: true]
-    [wsgen] [WrapperGen - method: getNonoperatedServices()]
-    [wsgen] [method.getDeclaringType(): compbio.data.msa.RegistryWS]
-    [wsgen] [requestWrapper: compbio.data.msa.jaxws.GetNonoperatedServices]
     [wsgen] [should process method: getLastTested hasWebMethods: false ]
     [wsgen] [endpointReferencesInterface: true]
     [wsgen] [declaring class has WebSevice: true]
@@ -1205,8 +1423,6 @@ build-server:
     [wsgen] compbio/data/msa/jaxws/GetLastTestedOn.java
     [wsgen] compbio/data/msa/jaxws/GetLastTestedOnResponse.java
     [wsgen] compbio/data/msa/jaxws/GetLastTestedResponse.java
-    [wsgen] compbio/data/msa/jaxws/GetNonoperatedServices.java
-    [wsgen] compbio/data/msa/jaxws/GetNonoperatedServicesResponse.java
     [wsgen] compbio/data/msa/jaxws/GetServiceCategories.java
     [wsgen] compbio/data/msa/jaxws/GetServiceCategoriesResponse.java
     [wsgen] compbio/data/msa/jaxws/GetServiceDescription.java
@@ -1333,4 +1549,4 @@ build-server:
     [wsgen] Note:      ap round: 2
 
 BUILD SUCCESSFUL
-Total time: 8 seconds
+Total time: 9 seconds