1 import org.apache.tools.ant.filters.ReplaceTokens
2 import org.gradle.internal.os.OperatingSystem
3 import org.gradle.plugins.ide.eclipse.model.*
4 import groovy.transform.ExternalizeMethods
21 mainClassName = launcherClass
22 def classes = "$jalviewDir/$classesDir"
24 // configure classpath/args for j8/j11 compilation
26 def jalviewDirAbsolutePath = file(jalviewDir).getAbsolutePath()
29 def compile_source_compatibility
30 def compile_target_compatibility
33 buildProperties = jalviewDir + "/" + classesDir +"/" + buildPropertiesFile
39 def JAVA_INTEGER_VERSION
40 //def additional_compiler_args = []
41 // this property is for the Java library used in eclipse
42 def eclipse_java_runtime_name
43 if (JAVA_VERSION.equals("1.8")) {
44 JAVA_INTEGER_VERSION = "8"
48 compile_source_compatibility = 1.8
49 compile_target_compatibility = 1.8
50 eclipse_java_runtime_name = "JavaSE-1.8"
51 } else if (JAVA_VERSION.equals("11")) {
52 JAVA_INTEGER_VERSION = "11"
54 libDistDir = j11libDir
55 compile_source_compatibility = 11
56 compile_target_compatibility = 11
57 eclipse_java_runtime_name = "JavaSE-11"
58 /* compile without modules -- using classpath libraries
59 additional_compiler_args += [
60 '--module-path', ext.modules_compileClasspath.asPath,
61 '--add-modules', j11modules
64 } else if (JAVA_VERSION.equals("12") || JAVA_VERSION.equals("13")) {
65 JAVA_INTEGER_VERSION = JAVA_VERSION
67 libDistDir = j11libDir
68 compile_source_compatibility = JAVA_VERSION
69 compile_target_compatibility = JAVA_VERSION
70 eclipse_java_runtime_name = "JavaSE-11"
71 /* compile without modules -- using classpath libraries
72 additional_compiler_args += [
73 '--module-path', ext.modules_compileClasspath.asPath,
74 '--add-modules', j11modules
78 throw new GradleException("JAVA_VERSION=$JAVA_VERSION not currently supported by Jalview")
85 srcDirs "$jalviewDir/$sourceDir"
86 outputDir = file("$classes")
90 srcDirs "$jalviewDir/$resourceDir"
93 compileClasspath = files(sourceSets.main.java.outputDir)
94 compileClasspath += fileTree(dir: "$jalviewDir/$libDir", include: ["*.jar"])
96 runtimeClasspath = compileClasspath
103 name = eclipse_project_name
105 natures 'org.eclipse.jdt.core.javanature',
106 'org.eclipse.buildship.core.gradleprojectnature'
108 buildCommand 'org.eclipse.jdt.core.javabuilder'
109 buildCommand 'org.eclipse.buildship.core.gradleprojectbuilder'
113 //defaultOutputDir = sourceSets.main.java.outputDir
115 configurations.each{ if (it.isCanBeResolved()) {
120 minusConfigurations += removeThese
121 plusConfigurations = [ ]
125 def removeTheseToo = []
126 HashMap<String, Boolean> addedSrcPath = new HashMap<>();
127 cp.entries.each { entry ->
128 if (entry.kind == 'src') {
129 if (addedSrcPath.getAt(entry.path) || !(entry.path == "src" || entry.path == "test")) {
130 removeTheseToo += entry
132 addedSrcPath.putAt(entry.path, true)
136 cp.entries.removeAll(removeTheseToo)
138 cp.entries += new Output("bin/main")
139 cp.entries += new Library(fileReference(helpParentDir))
140 cp.entries += new Library(fileReference(resourceDir))
142 HashMap<String, Boolean> addedLibPath = new HashMap<>();
144 // changing from sourcesets.main.classpath to specific Java version lib
145 //sourceSets.main.compileClasspath.each{
146 fileTree("$jalviewDir/$libDistDir").include("**/*.jar").include("*.jar").each {
147 //don't want to add outputDir as eclipse is using its own output dir in bin/main
148 if (it.isDirectory() || ! it.exists()) {
149 // don't add dirs to classpath
152 def itPath = it.toString()
153 if (itPath.startsWith(jalviewDirAbsolutePath+"/")) {
154 itPath = itPath.substring(jalviewDirAbsolutePath.length()+1)
156 if (addedLibPath.get(itPath)) {
157 //println("Not adding duplicate entry "+itPath)
159 //println("Adding entry "+itPath)
160 cp.entries += new Library(fileReference(itPath))
161 addedLibPath.put(itPath, true)
168 containers 'org.eclipse.buildship.core.gradleclasspathcontainer'
172 // for the IDE, use java 11 compatibility
173 sourceCompatibility = compile_source_compatibility
174 targetCompatibility = compile_target_compatibility
175 javaRuntimeName = eclipse_java_runtime_name
179 withProperties { props ->
180 def jalview_prefs = new Properties()
181 def ins = new FileInputStream(jalviewDirAbsolutePath+"/"+eclipse_extra_jdt_prefs_file)
182 jalview_prefs.load(ins)
184 jalview_prefs.forEach { t, v ->
185 if (props.getAt(t) == null) {
194 //synchronizationTasks eclipseClasspath
195 //autoBuildTasks eclipseClasspath
201 sourceCompatibility = compile_source_compatibility
202 targetCompatibility = compile_target_compatibility
203 //options.compilerArgs = additional_compiler_args
204 print ("Setting target compatibility to "+targetCompatibility+"\n")
210 delete sourceSets.main.java.outputDir
214 task jalviewjs_unzipFiles {
215 def zipFiles = fileTree(dir: jalviewjs_utils_dir+"/"+jalviewjs_libjs_dir).include("*.zip")
216 zipFiles += jalviewjs_utils_dir+"/"+jalviewjs_swingjs_zip
219 zipFiles.each { file_zip ->
221 from zipTree(file_zip)
222 into jalviewjs_site_dir
227 inputs.files zipFiles
228 outputs.dir jalviewjs_site_dir
232 def eclipseDropinsDir
233 def eclipsePluginsDir
234 task jalviewjs_eclipsePaths {
235 if (OperatingSystem.current().isMacOsX()) {
236 eclipseDropinsDir = jalviewjs_eclipse_root+"/Contents/Eclipse/dropins"
237 eclipsePluginsDir = jalviewjs_eclipse_root+"/Contents/Eclipse/plugins"
238 eclipseBinary = jalviewjs_eclipse_root+"/Contents/MacOS/eclipse"
239 } else if (OperatingSystem.current().isWindows()) { // check this!
240 eclipseDropinsDir = jalviewjs_eclipse_root+"/dropins"
241 eclipsePluginsDir = jalviewjs_eclipse_root+"/plugins"
242 eclipseBinary = jalviewjs_eclipse_root+"/eclipse"
243 } else { // linux or unix
244 eclipseDropinsDir = jalviewjs_eclipse_root+"/dropins"
245 eclipsePluginsDir = jalviewjs_eclipse_root+"/plugins"
246 eclipseBinary = jalviewjs_eclipse_root+"/eclipse"
250 task jalviewjs_eclipse_copy_dropins (type: Copy) {
251 dependsOn jalviewjs_eclipsePaths
252 def inputFiles = fileTree(jalviewjs_utils_dir+"/"+jalviewjs_eclipse_dropins_dir)
253 def outputDir = eclipseDropinsDir
256 inputs.files inputFiles
257 //outputs.dir outputDir
260 task jalviewjs_eclipse_copy_plugins (type: Copy) {
261 dependsOn jalviewjs_eclipsePaths
262 def inputFiles = fileTree(jalviewjs_utils_dir+"/"+jalviewjs_eclipse_plugins_dir)
263 def outputDir = eclipsePluginsDir
266 //inputs.files inputFiles
267 //outputs.dir outputDir
270 def tempEclipseWorkspace = ""
272 task jalviewjs_setTempEclipseWorkspace {
273 tempEclipseWorkspace = file(jalviewjs_eclipse_workspace)
274 if (!tempEclipseWorkspace.exists()) {
275 tempEclipseWorkspace = File.createTempDir()
276 //tempEclipseWorkspace.deleteOnExit()
280 task jalviewjs_eclipse_setup {
281 dependsOn jalviewjs_eclipse_copy_dropins
282 dependsOn jalviewjs_eclipse_copy_plugins
283 dependsOn jalviewjs_setTempEclipseWorkspace
286 task jalviewjs_createJ2sSettings(type: WriteProperties) {
287 outputFile (jalviewDir+"/"+jalviewjs_j2s_settings)
288 def props = project.properties.sort { it.key }
289 props.each { prop, val ->
290 if (prop.startsWith("j2s.") && val != null) {
294 outputs.file(outputFile)
297 task jalviewjs_copyResources (type: Copy) {
298 from fileTree(dir: jalviewjs_resource_dir)
299 into jalviewjs_site_dir+"/"+jalviewjs_j2s_subdir
302 task jalviewjs_copySiteResources (type: Copy) {
303 from fileTree(dir: jalviewjs_utils_dir+"/"+jalviewjs_site_resource_dir)
304 into jalviewjs_site_dir
307 task cleanJalviewjsSite {
308 //delete jalviewjs_site_dir
311 task jalviewjsProjectImport(type: Exec) {
312 // work out how to do this!
314 dependsOn jalviewjs_eclipsePaths
315 dependsOn jalviewjs_eclipse_setup
316 executable(eclipseBinary)
317 args(["-nosplash", "--launcher.suppressErrors", "-application", "com.seeq.eclipse.importprojects.headlessimport", "-data", tempEclipseWorkspace.getPath(), "-import", jalviewDirAbsolutePath])
319 def tempdir = tempEclipseWorkspace.getPath()+"/.metadata/.plugins/org.eclipse.core.resources/.projects/jalview"
323 task jalviewjsTranspile(type: Exec) {
324 dependsOn jalviewjsProjectImport
325 dependsOn jalviewjs_eclipsePaths
326 executable(eclipseBinary)
327 args(["-nosplash", "--launcher.suppressErrors", "-application", "org.eclipse.jdt.apt.core.aptBuild", "-data", tempEclipseWorkspace, "-"+jalviewjs_eclipseBuildArg, eclipse_project_name ])
330 task jalviewjsBuildSite {
331 dependsOn jalviewjs_unzipFiles
332 dependsOn jalviewjs_copyResources
333 dependsOn jalviewjs_copySiteResources
334 dependsOn jalviewjsTranspile
338 dependsOn jalviewjs_createJ2sSettings
339 dependsOn jalviewjsBuildSite