examples/groovy/iterateOverAlignments.groovy

   1 import jalview.analysis.*;
   2 import jalview.datamodel.*;
   3 import jalview.gui.AlignFrame;
   4 import jalview.gui.AlignViewport;
   5
   6 def af = Jalview.getAlignFrames();
   7
   8 for (ala in af)
   9 {
  10         def al = ala.viewport.alignment;
  11         if (al!=null && al.getCodonFrames()!=null)
  12         {
  13                 al.getCodonFrames().each {
  14                         it.getdnaToProt().each {
  15                                 it2 -> println it2.fromShifts+"\n"
  16                         }
  17                 }
  18         }
  19 }
  20