JAL-629 Now showing temp fac and secondary structure for File opened structures and...
[jalview.git] / examples / test_fab41.result / argfile.txt
1 --debug
2 --nonews
3 --nosplash
4 --noannotation
5 --substitutions
6 --open={argfiledirname}/sample.a2m
7 --colour=gecos:flower
8 --structure={dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
9 --paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json
10 --tempfac=plddt
11 --structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
12 --paematrix={dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json
13 --tempfac=plddt
14 --structure={dirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
15 --paematrix={dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
16 --tempfac=plddt
17 --structure={dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
18 --paematrix={dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
19 --tempfac=plddt
20 --structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
21 --tempfac=plddt
22 --paematrix={dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json
23 --image={dirname}/{basename}.html
24 #--headless