resources/scoreModel/seqspace.scm

   1 ScoreMatrix Identity (SeqSpace)
   2 ARNDCQEGHILKMFPSTWYVBZX
   3 #
   4 # The identity substitution matrix, that gives the SeqSpace PCA calculation as in Jalview 2.10.1
   5 #
   6 #
   7 #       A       R       N       D       C       Q       E       G       H       I       L       K       M       F       P       S       T       W       Y       V       B       Z       X
   8 #
   9 A       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
  10 R       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
  11 N       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
  12 D       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
  13 C       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
  14 Q       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
  15 E       0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
  16 G       0       0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
  17 H       0       0       0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0
  18 I       0       0       0       0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0
  19 L       0       0       0       0       0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0
  20 K       0       0       0       0       0       0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0
  21 M       0       0       0       0       0       0       0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0
  22 F       0       0       0       0       0       0       0       0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0
  23 P       0       0       0       0       0       0       0       0       0       0       0       0       0       0       1       0       0       0       0       0       0       0       0
  24 S       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       1       0       0       0       0       0       0       0
  25 T       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       1       0       0       0       0       0       0
  26 W       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       1       0       0       0       0       0
  27 Y       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       1       0       0       0       0
  28 V       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       1       0       0       0
  29 B       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       1       0       0
  30 Z       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       1       0
  31 X       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       1