schemas/vamsas.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->\r
   3 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" targetNamespace="www.vamsas.ac.uk/jalview/version2" elementFormDefault="qualified" attributeFormDefault="unqualified">\r
   4         <xs:complexType name="VAMSAS">\r
   5                 <xs:sequence>\r
   6                         <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">\r
   7                                 <xs:complexType>\r
   8                                         <xs:sequence>\r
   9                                                 <xs:element name="Annotation" minOccurs="0">\r
  10                                                         <xs:complexType>\r
  11                                                                 <xs:sequence>\r
  12                                                                         <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>\r
  13                                                                         <xs:element name="label" type="xs:string"/>\r
  14                                                                         <xs:element name="description" type="xs:string"/>\r
  15                                                                         <xs:element name="thresholdLine" minOccurs="0">\r
  16                                                                                 <xs:complexType>\r
  17                                                                                         <xs:attribute name="label" type="xs:string"/>\r
  18                                                                                         <xs:attribute name="value" type="xs:float"/>\r
  19                                                                                         <xs:attribute name="colour" type="xs:int"/>\r
  20                                                                                 </xs:complexType>\r
  21                                                                         </xs:element>\r
  22                                                                 </xs:sequence>\r
  23                                                                 <xs:attribute name="graph" type="xs:boolean" use="required"/>\r
  24                                                                 <xs:attribute name="graphType" type="xs:int" use="optional"/>\r
  25                                                         </xs:complexType>\r
  26                                                 </xs:element>\r
  27                                                 <xs:element ref="vamsas:SequenceSet"/>\r
  28                                         </xs:sequence>\r
  29                                 </xs:complexType>\r
  30                         </xs:element>\r
  31                         <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>\r
  32                         <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>\r
  33                 </xs:sequence>\r
  34         </xs:complexType>\r
  35         <xs:element name="SequenceSet">\r
  36                 <xs:complexType>\r
  37                         <xs:sequence>\r
  38                                 <xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>\r
  39                                 <xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">\r
  40                                         <xs:complexType>\r
  41                                                 <xs:sequence>\r
  42                                                         <xs:element name="description" type="xs:string" minOccurs="0"/>\r
  43                                                         <xs:element name="status" type="xs:string" minOccurs="0"/>\r
  44                                                         <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>\r
  45                                                 </xs:sequence>\r
  46                                                 <xs:attribute name="type" type="xs:string" use="required"/>\r
  47                                                 <xs:attribute name="end" type="xs:string" use="required"/>\r
  48                                                 <xs:attribute name="begin" type="xs:string" use="required"/>\r
  49                                                 <xs:attribute name="seqRef" type="xs:string" use="required"/>\r
  50                                         </xs:complexType>\r
  51                                 </xs:element>\r
  52                         </xs:sequence>\r
  53                         <xs:attribute name="gapChar" type="xs:string" use="required"/>\r
  54                         <xs:attribute name="aligned" type="xs:boolean" use="optional"/>\r
  55                 </xs:complexType>\r
  56         </xs:element>\r
  57         <xs:element name="annotationElement">\r
  58                 <xs:complexType>\r
  59                         <xs:sequence>\r
  60                                 <xs:element name="displayCharacter" type="xs:string"/>\r
  61                                 <xs:element name="description" type="xs:string"/>\r
  62                                 <xs:element name="secondaryStructure">\r
  63                                         <xs:simpleType>\r
  64                                                 <xs:restriction base="xs:string">\r
  65                                                         <xs:length value="1"/>\r
  66                                                 </xs:restriction>\r
  67                                         </xs:simpleType>\r
  68                                 </xs:element>\r
  69                                 <xs:element name="value" type="xs:float"/>\r
  70                         </xs:sequence>\r
  71                         <xs:attribute name="position" type="xs:int" use="required"/>\r
  72                 </xs:complexType>\r
  73         </xs:element>\r
  74         <xs:complexType name="SequenceType">\r
  75                 <xs:sequence>\r
  76                         <xs:element name="sequence" type="xs:string"/>\r
  77                         <xs:element name="name" type="xs:string"/>\r
  78                 </xs:sequence>\r
  79                 <xs:attribute name="id" type="xs:string"/>\r
  80                 <xs:attribute name="description" type="xs:string"/>\r
  81         </xs:complexType>\r
  82 </xs:schema>\r