src/jalview/datamodel/annotations/AlphaFoldAnnotationRowBuilder.java

   1 package jalview.datamodel.annotations;
   2
   3 import jalview.datamodel.AlignmentAnnotation.TFType;
   4 import jalview.datamodel.Annotation;
   5 import jalview.util.MessageManager;
   6
   7 public class AlphaFoldAnnotationRowBuilder extends AnnotationRowBuilder
   8 {
   9   public AlphaFoldAnnotationRowBuilder()
  10   {
  11     super(MessageManager.getString("label.alphafold_reliability"));
  12     min = 0;
  13     max = 100;
  14     hasMinMax = true;
  15     this.setTFType(TFType.PLDDT);
  16   }
  17
  18   @Override
  19   public void processAnnotation(Annotation annotation)
  20   {
  21     if (annotation.value > 90)
  22     {
  23       // Very High
  24       annotation.colour = new java.awt.Color(0, 83, 214);
  25     }
  26     if (annotation.value <= 90)
  27     {
  28       // High
  29       annotation.colour = new java.awt.Color(101, 203, 243);
  30     }
  31     if (annotation.value <= 70)
  32     {
  33       // Confident
  34       annotation.colour = new java.awt.Color(255, 219, 19);
  35     }
  36     if (annotation.value < 50)
  37     {
  38       annotation.colour = new java.awt.Color(255, 125, 69);
  39     }
  40   }
  41 }