src/jalview/gui/AnnotationColumnChooser.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21
  22 package jalview.gui;
  23
  24 import jalview.datamodel.AlignmentAnnotation;
  25 import jalview.datamodel.HiddenColumns;
  26 import jalview.schemes.AnnotationColourGradient;
  27 import jalview.util.MessageManager;
  28 import jalview.viewmodel.annotationfilter.AnnotationFilterParameter;
  29
  30 import java.awt.BorderLayout;
  31 import java.awt.CardLayout;
  32 import java.awt.Color;
  33 import java.awt.event.ActionEvent;
  34 import java.awt.event.ActionListener;
  35 import java.awt.event.ItemEvent;
  36 import java.awt.event.ItemListener;
  37 import java.util.Iterator;
  38
  39 import javax.swing.ButtonGroup;
  40 import javax.swing.JCheckBox;
  41 import javax.swing.JComboBox;
  42 import javax.swing.JInternalFrame;
  43 import javax.swing.JLayeredPane;
  44 import javax.swing.JPanel;
  45 import javax.swing.JRadioButton;
  46 import javax.swing.JTextField;
  47 import javax.swing.border.TitledBorder;
  48 import javax.swing.event.DocumentEvent;
  49 import javax.swing.event.DocumentListener;
  50
  51 import net.miginfocom.swing.MigLayout;
  52
  53 @SuppressWarnings("serial")
  54 public class AnnotationColumnChooser extends AnnotationRowFilter implements
  55         ItemListener
  56 {
  57   private JPanel switchableViewsPanel = new JPanel(new CardLayout());
  58
  59   private JPanel annotationComboBoxPanel = new JPanel();
  60
  61   private StructureFilterPanel gStructureFilterPanel;
  62
  63   private StructureFilterPanel ngStructureFilterPanel;
  64
  65   private StructureFilterPanel currentStructureFilterPanel;
  66
  67   private SearchPanel currentSearchPanel;
  68
  69   private SearchPanel gSearchPanel;
  70
  71   private SearchPanel ngSearchPanel;
  72
  73   private FurtherActionPanel currentFurtherActionPanel;
  74
  75   private FurtherActionPanel gFurtherActionPanel;
  76
  77   private FurtherActionPanel ngFurtherActionPanel;
  78
  79   public static final int ACTION_OPTION_SELECT = 1;
  80
  81   public static int ACTION_OPTION_HIDE = 2;
  82
  83   public static String NO_GRAPH_VIEW = "0";
  84
  85   public static String GRAPH_VIEW = "1";
  86
  87   private int actionOption = ACTION_OPTION_SELECT;
  88
  89   private HiddenColumns oldHiddenColumns;
  90
  91   public AnnotationColumnChooser(AlignViewport av, final AlignmentPanel ap)
  92   {
  93     super(av, ap);
  94     frame = new JInternalFrame();
  95     frame.setContentPane(this);
  96     frame.setLayer(JLayeredPane.PALETTE_LAYER);
  97     Desktop.addInternalFrame(frame,
  98             MessageManager.getString("label.select_by_annotation"), 520,
  99             215);
 100
 101     addSliderChangeListener();
 102     addSliderMouseListeners();
 103
 104     if (av.getAlignment().getAlignmentAnnotation() == null)
 105     {
 106       return;
 107     }
 108     setOldHiddenColumns(av.getAlignment().getHiddenColumns());
 109     adjusting = true;
 110
 111     setAnnotations(new JComboBox<String>(getAnnotationItems(false)));
 112     populateThresholdComboBox(threshold);
 113
 114     // restore Object state from the previous session if one exists
 115     if (av.getAnnotationColumnSelectionState() != null)
 116     {
 117       currentSearchPanel = av.getAnnotationColumnSelectionState()
 118               .getCurrentSearchPanel();
 119       currentStructureFilterPanel = av.getAnnotationColumnSelectionState()
 120               .getCurrentStructureFilterPanel();
 121       annotations.setSelectedIndex(av.getAnnotationColumnSelectionState()
 122               .getAnnotations().getSelectedIndex());
 123       threshold.setSelectedIndex(av.getAnnotationColumnSelectionState()
 124               .getThreshold().getSelectedIndex());
 125       actionOption = av.getAnnotationColumnSelectionState()
 126               .getActionOption();
 127     }
 128
 129     try
 130     {
 131       jbInit();
 132     } catch (Exception ex)
 133     {
 134     }
 135     adjusting = false;
 136
 137     updateView();
 138     frame.invalidate();
 139     frame.pack();
 140   }
 141
 142   @Override
 143   protected void jbInit()
 144   {
 145     super.jbInit();
 146
 147     JPanel thresholdPanel = new JPanel();
 148     thresholdPanel.setBorder(new TitledBorder(MessageManager
 149             .getString("label.threshold_filter")));
 150     thresholdPanel.setBackground(Color.white);
 151     thresholdPanel.setFont(JvSwingUtils.getLabelFont());
 152     thresholdPanel.setLayout(new MigLayout("", "[left][right]", "[][]"));
 153
 154     JPanel actionPanel = new JPanel();
 155     actionPanel.setBackground(Color.white);
 156     actionPanel.setFont(JvSwingUtils.getLabelFont());
 157
 158     JPanel graphFilterView = new JPanel();
 159     graphFilterView.setLayout(new MigLayout("", "[left][right]", "[][]"));
 160     graphFilterView.setBackground(Color.white);
 161
 162     JPanel noGraphFilterView = new JPanel();
 163     noGraphFilterView.setLayout(new MigLayout("", "[left][right]", "[][]"));
 164     noGraphFilterView.setBackground(Color.white);
 165
 166     annotationComboBoxPanel.setBackground(Color.white);
 167     annotationComboBoxPanel.setFont(JvSwingUtils.getLabelFont());
 168
 169     gSearchPanel = new SearchPanel(this);
 170     ngSearchPanel = new SearchPanel(this);
 171     gFurtherActionPanel = new FurtherActionPanel(this);
 172     ngFurtherActionPanel = new FurtherActionPanel(this);
 173     gStructureFilterPanel = new StructureFilterPanel(this);
 174     ngStructureFilterPanel = new StructureFilterPanel(this);
 175
 176     thresholdPanel.add(getThreshold());
 177     thresholdPanel.add(thresholdValue, "wrap");
 178     thresholdPanel.add(slider, "grow, span, wrap");
 179
 180     actionPanel.add(ok);
 181     actionPanel.add(cancel);
 182
 183     graphFilterView.add(gSearchPanel, "grow, span, wrap");
 184     graphFilterView.add(gStructureFilterPanel, "grow, span, wrap");
 185     graphFilterView.add(thresholdPanel, "grow, span, wrap");
 186     graphFilterView.add(gFurtherActionPanel);
 187
 188     noGraphFilterView.add(ngSearchPanel, "grow, span, wrap");
 189     noGraphFilterView.add(ngStructureFilterPanel, "grow, span, wrap");
 190     noGraphFilterView.add(ngFurtherActionPanel);
 191
 192     annotationComboBoxPanel.add(getAnnotations());
 193     switchableViewsPanel.add(noGraphFilterView,
 194             AnnotationColumnChooser.NO_GRAPH_VIEW);
 195     switchableViewsPanel.add(graphFilterView,
 196             AnnotationColumnChooser.GRAPH_VIEW);
 197
 198     this.setLayout(new BorderLayout());
 199     this.add(annotationComboBoxPanel, java.awt.BorderLayout.PAGE_START);
 200     this.add(switchableViewsPanel, java.awt.BorderLayout.CENTER);
 201     this.add(actionPanel, java.awt.BorderLayout.SOUTH);
 202
 203     selectedAnnotationChanged();
 204     updateThresholdPanelToolTip();
 205     this.validate();
 206   }
 207
 208   protected void updateThresholdPanelToolTip()
 209   {
 210     thresholdValue.setToolTipText("");
 211     slider.setToolTipText("");
 212
 213     String defaultTtip = MessageManager
 214             .getString("info.change_threshold_mode_to_enable");
 215
 216     String thresh = getThreshold().getSelectedItem().toString();
 217     if (thresh.equalsIgnoreCase("No Threshold"))
 218     {
 219       thresholdValue.setToolTipText(defaultTtip);
 220       slider.setToolTipText(defaultTtip);
 221     }
 222   }
 223
 224   @Override
 225   protected void reset()
 226   {
 227     if (this.getOldHiddenColumns() != null)
 228     {
 229       av.getColumnSelection().clear();
 230
 231       if (av.getAnnotationColumnSelectionState() != null)
 232       {
 233         HiddenColumns oldHidden = av
 234                 .getAnnotationColumnSelectionState()
 235                 .getOldHiddenColumns();
 236         if (oldHidden != null && oldHidden.getListOfCols() != null
 237                 && !oldHidden.getListOfCols().isEmpty())
 238         {
 239           for (Iterator<int[]> itr = oldHidden.getListOfCols()
 240                   .iterator(); itr.hasNext();)
 241           {
 242             int positions[] = itr.next();
 243             av.hideColumns(positions[0], positions[1]);
 244           }
 245         }
 246         av.getAlignment().setHiddenColumns(oldHidden);
 247       }
 248       ap.paintAlignment(true);
 249     }
 250
 251   }
 252
 253   @Override
 254   public void valueChanged(boolean updateAllAnnotation)
 255   {
 256     if (slider.isEnabled())
 257     {
 258       getCurrentAnnotation().threshold.value = slider.getValue() / 1000f;
 259       updateView();
 260       propagateSeqAssociatedThreshold(updateAllAnnotation,
 261               getCurrentAnnotation());
 262       ap.paintAlignment(false);
 263     }
 264   }
 265
 266   @Override
 267   public void updateView()
 268   {
 269     // Check if combobox is still adjusting
 270     if (adjusting)
 271     {
 272       return;
 273     }
 274
 275     AnnotationFilterParameter filterParams = new AnnotationFilterParameter();
 276
 277     setCurrentAnnotation(av.getAlignment().getAlignmentAnnotation()[annmap[getAnnotations()
 278             .getSelectedIndex()]]);
 279
 280     int selectedThresholdItem = getSelectedThresholdItem(getThreshold()
 281             .getSelectedIndex());
 282
 283     slider.setEnabled(true);
 284     thresholdValue.setEnabled(true);
 285
 286     if (selectedThresholdItem == AnnotationColourGradient.NO_THRESHOLD)
 287     {
 288       slider.setEnabled(false);
 289       thresholdValue.setEnabled(false);
 290       thresholdValue.setText("");
 291       // build filter params
 292     }
 293     else if (selectedThresholdItem != AnnotationColourGradient.NO_THRESHOLD)
 294     {
 295       if (getCurrentAnnotation().threshold == null)
 296       {
 297         getCurrentAnnotation()
 298                 .setThreshold(
 299                         new jalview.datamodel.GraphLine(
 300                                 (getCurrentAnnotation().graphMax - getCurrentAnnotation().graphMin) / 2f,
 301                                 "Threshold", Color.black));
 302       }
 303
 304       adjusting = true;
 305       float range = getCurrentAnnotation().graphMax * 1000
 306               - getCurrentAnnotation().graphMin * 1000;
 307
 308       slider.setMinimum((int) (getCurrentAnnotation().graphMin * 1000));
 309       slider.setMaximum((int) (getCurrentAnnotation().graphMax * 1000));
 310       slider.setValue((int) (getCurrentAnnotation().threshold.value * 1000));
 311       thresholdValue.setText(getCurrentAnnotation().threshold.value + "");
 312       slider.setMajorTickSpacing((int) (range / 10f));
 313       slider.setEnabled(true);
 314       thresholdValue.setEnabled(true);
 315       adjusting = false;
 316
 317       // build filter params
 318       filterParams
 319               .setThresholdType(AnnotationFilterParameter.ThresholdType.NO_THRESHOLD);
 320       if (getCurrentAnnotation().graph != AlignmentAnnotation.NO_GRAPH)
 321       {
 322         filterParams
 323                 .setThresholdValue(getCurrentAnnotation().threshold.value);
 324
 325         if (selectedThresholdItem == AnnotationColourGradient.ABOVE_THRESHOLD)
 326         {
 327           filterParams
 328                   .setThresholdType(AnnotationFilterParameter.ThresholdType.ABOVE_THRESHOLD);
 329         }
 330         else if (selectedThresholdItem == AnnotationColourGradient.BELOW_THRESHOLD)
 331         {
 332           filterParams
 333                   .setThresholdType(AnnotationFilterParameter.ThresholdType.BELOW_THRESHOLD);
 334         }
 335       }
 336     }
 337
 338     updateThresholdPanelToolTip();
 339     if (currentStructureFilterPanel != null)
 340     {
 341       if (currentStructureFilterPanel.alphaHelix.isSelected())
 342       {
 343         filterParams.setFilterAlphaHelix(true);
 344       }
 345       if (currentStructureFilterPanel.betaStrand.isSelected())
 346       {
 347         filterParams.setFilterBetaSheet(true);
 348       }
 349       if (currentStructureFilterPanel.turn.isSelected())
 350       {
 351         filterParams.setFilterTurn(true);
 352       }
 353     }
 354
 355     if (currentSearchPanel != null)
 356     {
 357
 358       if (!currentSearchPanel.searchBox.getText().isEmpty())
 359       {
 360         currentSearchPanel.description.setEnabled(true);
 361         currentSearchPanel.displayName.setEnabled(true);
 362         filterParams.setRegexString(currentSearchPanel.searchBox.getText());
 363         if (currentSearchPanel.displayName.isSelected())
 364         {
 365           filterParams
 366                   .addRegexSearchField(AnnotationFilterParameter.SearchableAnnotationField.DISPLAY_STRING);
 367         }
 368         if (currentSearchPanel.description.isSelected())
 369         {
 370           filterParams
 371                   .addRegexSearchField(AnnotationFilterParameter.SearchableAnnotationField.DESCRIPTION);
 372         }
 373       }
 374       else
 375       {
 376         currentSearchPanel.description.setEnabled(false);
 377         currentSearchPanel.displayName.setEnabled(false);
 378       }
 379     }
 380
 381     av.getColumnSelection().filterAnnotations(
 382             getCurrentAnnotation().annotations, filterParams);
 383
 384     av.showAllHiddenColumns();
 385     if (getActionOption() == ACTION_OPTION_HIDE)
 386     {
 387       av.hideSelectedColumns();
 388     }
 389
 390     filterParams = null;
 391     av.setAnnotationColumnSelectionState(this);
 392     ap.paintAlignment(true);
 393   }
 394
 395   public HiddenColumns getOldHiddenColumns()
 396   {
 397     return oldHiddenColumns;
 398   }
 399
 400   public void setOldHiddenColumns(HiddenColumns currentHiddenColumns)
 401   {
 402     if (currentHiddenColumns != null)
 403     {
 404       this.oldHiddenColumns = new HiddenColumns(currentHiddenColumns);
 405     }
 406   }
 407
 408   public FurtherActionPanel getCurrentFutherActionPanel()
 409   {
 410     return currentFurtherActionPanel;
 411   }
 412
 413   public void setCurrentFutherActionPanel(
 414           FurtherActionPanel currentFutherActionPanel)
 415   {
 416     this.currentFurtherActionPanel = currentFutherActionPanel;
 417   }
 418
 419   public SearchPanel getCurrentSearchPanel()
 420   {
 421     return currentSearchPanel;
 422   }
 423
 424   public void setCurrentSearchPanel(SearchPanel currentSearchPanel)
 425   {
 426     this.currentSearchPanel = currentSearchPanel;
 427   }
 428
 429   public int getActionOption()
 430   {
 431     return actionOption;
 432   }
 433
 434   public void setActionOption(int actionOption)
 435   {
 436     this.actionOption = actionOption;
 437   }
 438
 439   public StructureFilterPanel getCurrentStructureFilterPanel()
 440   {
 441     return currentStructureFilterPanel;
 442   }
 443
 444   public void setCurrentStructureFilterPanel(
 445           StructureFilterPanel currentStructureFilterPanel)
 446   {
 447     this.currentStructureFilterPanel = currentStructureFilterPanel;
 448   }
 449
 450   public void select_action(ActionEvent actionEvent)
 451   {
 452     JRadioButton radioButton = (JRadioButton) actionEvent.getSource();
 453     if (radioButton.isSelected())
 454     {
 455       setActionOption(ACTION_OPTION_SELECT);
 456       updateView();
 457     }
 458   }
 459
 460   public void hide_action(ActionEvent actionEvent)
 461   {
 462     JRadioButton radioButton = (JRadioButton) actionEvent.getSource();
 463     if (radioButton.isSelected())
 464     {
 465       setActionOption(ACTION_OPTION_HIDE);
 466       updateView();
 467     }
 468   }
 469
 470   @Override
 471   public void itemStateChanged(ItemEvent e)
 472   {
 473     selectedAnnotationChanged();
 474   }
 475
 476   @Override
 477   public void selectedAnnotationChanged()
 478   {
 479     String currentView = AnnotationColumnChooser.NO_GRAPH_VIEW;
 480     if (av.getAlignment().getAlignmentAnnotation()[annmap[getAnnotations()
 481             .getSelectedIndex()]].graph != AlignmentAnnotation.NO_GRAPH)
 482     {
 483       currentView = AnnotationColumnChooser.GRAPH_VIEW;
 484     }
 485
 486     gSearchPanel.syncState();
 487     gFurtherActionPanel.syncState();
 488     gStructureFilterPanel.syncState();
 489
 490     ngSearchPanel.syncState();
 491     ngFurtherActionPanel.syncState();
 492     ngStructureFilterPanel.syncState();
 493
 494     CardLayout switchableViewsLayout = (CardLayout) switchableViewsPanel
 495             .getLayout();
 496     switchableViewsLayout.show(switchableViewsPanel, currentView);
 497     updateView();
 498   }
 499
 500   public class FurtherActionPanel extends JPanel
 501   {
 502     private AnnotationColumnChooser aColChooser;
 503
 504     private JRadioButton hideOption = new JRadioButton();
 505
 506     private JRadioButton selectOption = new JRadioButton();
 507
 508     private ButtonGroup optionsGroup = new ButtonGroup();
 509
 510     public FurtherActionPanel(AnnotationColumnChooser aColChooser)
 511     {
 512       this.aColChooser = aColChooser;
 513       JvSwingUtils.jvInitComponent(selectOption, "action.select");
 514       selectOption.addActionListener(new ActionListener()
 515       {
 516         @Override
 517         public void actionPerformed(ActionEvent actionEvent)
 518         {
 519           selectRadioAction(actionEvent);
 520         }
 521       });
 522
 523       JvSwingUtils.jvInitComponent(hideOption, "action.hide");
 524       hideOption.addActionListener(new ActionListener()
 525       {
 526         @Override
 527         public void actionPerformed(ActionEvent actionEvent)
 528         {
 529           hideRadioAction(actionEvent);
 530         }
 531       });
 532
 533       optionsGroup.add(selectOption);
 534       optionsGroup.add(hideOption);
 535       optionsGroup.setSelected(selectOption.getModel(), true);
 536
 537       JvSwingUtils.jvInitComponent(this);
 538       syncState();
 539
 540       this.add(selectOption);
 541       this.add(hideOption);
 542     }
 543
 544     public void selectRadioAction(ActionEvent actionEvent)
 545     {
 546       aColChooser.setCurrentFutherActionPanel(this);
 547       aColChooser.select_action(actionEvent);
 548     }
 549
 550     public void hideRadioAction(ActionEvent actionEvent)
 551     {
 552       aColChooser.setCurrentFutherActionPanel(this);
 553       aColChooser.hide_action(actionEvent);
 554     }
 555
 556     public void syncState()
 557     {
 558       if (aColChooser.getActionOption() == AnnotationColumnChooser.ACTION_OPTION_HIDE)
 559       {
 560         this.optionsGroup.setSelected(this.hideOption.getModel(), true);
 561       }
 562       else
 563       {
 564         this.optionsGroup.setSelected(this.selectOption.getModel(), true);
 565       }
 566     }
 567   }
 568
 569   public class StructureFilterPanel extends JPanel
 570   {
 571     private AnnotationColumnChooser aColChooser;
 572
 573     private JCheckBox alphaHelix = new JCheckBox();
 574
 575     private JCheckBox betaStrand = new JCheckBox();
 576
 577     private JCheckBox turn = new JCheckBox();
 578
 579     private JCheckBox all = new JCheckBox();
 580
 581     public StructureFilterPanel(AnnotationColumnChooser aColChooser)
 582     {
 583       this.aColChooser = aColChooser;
 584
 585       JvSwingUtils.jvInitComponent(alphaHelix, "label.alpha_helix");
 586       alphaHelix.addActionListener(new ActionListener()
 587       {
 588         @Override
 589         public void actionPerformed(ActionEvent actionEvent)
 590         {
 591           alphaHelix_actionPerformed();
 592         }
 593       });
 594
 595       JvSwingUtils.jvInitComponent(betaStrand, "label.beta_strand");
 596       betaStrand.addActionListener(new ActionListener()
 597       {
 598         @Override
 599         public void actionPerformed(ActionEvent actionEvent)
 600         {
 601           betaStrand_actionPerformed();
 602         }
 603       });
 604
 605       JvSwingUtils.jvInitComponent(turn, "label.turn");
 606       turn.addActionListener(new ActionListener()
 607       {
 608         @Override
 609         public void actionPerformed(ActionEvent actionEvent)
 610         {
 611           turn_actionPerformed();
 612         }
 613       });
 614
 615       JvSwingUtils.jvInitComponent(all, "label.select_all");
 616       all.addActionListener(new ActionListener()
 617       {
 618         @Override
 619         public void actionPerformed(ActionEvent actionEvent)
 620         {
 621           all_actionPerformed();
 622         }
 623       });
 624
 625       this.setBorder(new TitledBorder(MessageManager
 626               .getString("label.structures_filter")));
 627       JvSwingUtils.jvInitComponent(this);
 628
 629       this.add(all);
 630       this.add(alphaHelix);
 631       this.add(betaStrand);
 632       this.add(turn);
 633     }
 634
 635     public void alphaHelix_actionPerformed()
 636     {
 637       updateSelectAllState();
 638       aColChooser.setCurrentStructureFilterPanel(this);
 639       aColChooser.updateView();
 640     }
 641
 642     public void betaStrand_actionPerformed()
 643     {
 644       updateSelectAllState();
 645       aColChooser.setCurrentStructureFilterPanel(this);
 646       aColChooser.updateView();
 647     }
 648
 649     public void turn_actionPerformed()
 650     {
 651       updateSelectAllState();
 652       aColChooser.setCurrentStructureFilterPanel(this);
 653       aColChooser.updateView();
 654     }
 655
 656     public void all_actionPerformed()
 657     {
 658       if (all.isSelected())
 659       {
 660         alphaHelix.setSelected(true);
 661         betaStrand.setSelected(true);
 662         turn.setSelected(true);
 663       }
 664       else
 665       {
 666         alphaHelix.setSelected(false);
 667         betaStrand.setSelected(false);
 668         turn.setSelected(false);
 669       }
 670       aColChooser.setCurrentStructureFilterPanel(this);
 671       aColChooser.updateView();
 672     }
 673
 674     public void updateSelectAllState()
 675     {
 676       if (alphaHelix.isSelected() && betaStrand.isSelected()
 677               && turn.isSelected())
 678       {
 679         all.setSelected(true);
 680       }
 681       else
 682       {
 683         all.setSelected(false);
 684       }
 685     }
 686
 687     public void syncState()
 688     {
 689       StructureFilterPanel sfp = aColChooser
 690               .getCurrentStructureFilterPanel();
 691       if (sfp != null)
 692       {
 693         alphaHelix.setSelected(sfp.alphaHelix.isSelected());
 694         betaStrand.setSelected(sfp.betaStrand.isSelected());
 695         turn.setSelected(sfp.turn.isSelected());
 696         if (sfp.all.isSelected())
 697         {
 698           all.setSelected(true);
 699           alphaHelix.setSelected(true);
 700           betaStrand.setSelected(true);
 701           turn.setSelected(true);
 702         }
 703       }
 704
 705     }
 706   }
 707
 708   public class SearchPanel extends JPanel
 709   {
 710     private AnnotationColumnChooser aColChooser;
 711
 712     private JCheckBox displayName = new JCheckBox();
 713
 714     private JCheckBox description = new JCheckBox();
 715
 716     private JTextField searchBox = new JTextField(10);
 717
 718     public SearchPanel(AnnotationColumnChooser aColChooser)
 719     {
 720
 721       this.aColChooser = aColChooser;
 722       JvSwingUtils.jvInitComponent(this);
 723       this.setBorder(new TitledBorder(MessageManager
 724               .getString("label.search_filter")));
 725
 726       JvSwingUtils.jvInitComponent(searchBox);
 727       searchBox.setToolTipText(MessageManager
 728               .getString("info.enter_search_text_here"));
 729       searchBox.getDocument().addDocumentListener(new DocumentListener()
 730       {
 731         @Override
 732         public void insertUpdate(DocumentEvent e)
 733         {
 734           searchStringAction();
 735         }
 736
 737         @Override
 738         public void removeUpdate(DocumentEvent e)
 739         {
 740           searchStringAction();
 741         }
 742
 743         @Override
 744         public void changedUpdate(DocumentEvent e)
 745         {
 746           searchStringAction();
 747         }
 748       });
 749
 750       JvSwingUtils.jvInitComponent(displayName, "label.label");
 751       displayName.setEnabled(false);
 752       displayName.addActionListener(new ActionListener()
 753       {
 754         @Override
 755         public void actionPerformed(ActionEvent actionEvent)
 756         {
 757           displayNameCheckboxAction();
 758         }
 759       });
 760
 761       JvSwingUtils.jvInitComponent(description, "label.description");
 762       description.setEnabled(false);
 763       description.addActionListener(new ActionListener()
 764       {
 765         @Override
 766         public void actionPerformed(ActionEvent actionEvent)
 767         {
 768           discriptionCheckboxAction();
 769         }
 770       });
 771
 772       syncState();
 773       this.add(searchBox);
 774       this.add(displayName);
 775       this.add(description);
 776     }
 777
 778     public void displayNameCheckboxAction()
 779     {
 780       aColChooser.setCurrentSearchPanel(this);
 781       aColChooser.updateView();
 782     }
 783
 784     public void discriptionCheckboxAction()
 785     {
 786       aColChooser.setCurrentSearchPanel(this);
 787       aColChooser.updateView();
 788     }
 789
 790     public void searchStringAction()
 791     {
 792       aColChooser.setCurrentSearchPanel(this);
 793       aColChooser.updateView();
 794       updateSearchPanelToolTips();
 795     }
 796
 797     public void syncState()
 798     {
 799       SearchPanel sp = aColChooser.getCurrentSearchPanel();
 800       if (sp != null)
 801       {
 802         description.setEnabled(sp.description.isEnabled());
 803         description.setSelected(sp.description.isSelected());
 804
 805         displayName.setEnabled(sp.displayName.isEnabled());
 806         displayName.setSelected(sp.displayName.isSelected());
 807
 808         searchBox.setText(sp.searchBox.getText());
 809       }
 810       updateSearchPanelToolTips();
 811     }
 812
 813     public void updateSearchPanelToolTips()
 814     {
 815       String defaultTtip = MessageManager
 816               .getString("info.enter_search_text_to_enable");
 817       String labelTtip = MessageManager.formatMessage(
 818               "info.search_in_annotation_label", annotations
 819                       .getSelectedItem().toString());
 820       String descTtip = MessageManager.formatMessage(
 821               "info.search_in_annotation_description", annotations
 822                       .getSelectedItem().toString());
 823       displayName.setToolTipText(displayName.isEnabled() ? labelTtip
 824               : defaultTtip);
 825       description.setToolTipText(description.isEnabled() ? descTtip
 826               : defaultTtip);
 827     }
 828   }
 829
 830 }