src/jalview/jbgui/GPCAPanel.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
   3  * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  10  *
  11  * Jalview is distributed in the hope that it will be useful, but
  12  * WITHOUT ANY WARRANTY; without even the implied warranty
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14  * PURPOSE.  See the GNU General Public License for more details.
  15  *
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  17  */
  18 package jalview.jbgui;
  19
  20 import jalview.util.MessageManager;
  21
  22 import java.awt.*;
  23 import java.awt.event.*;
  24
  25 import javax.swing.*;
  26 import javax.swing.event.*;
  27
  28 public class GPCAPanel extends JInternalFrame
  29 {
  30   JPanel jPanel2 = new JPanel();
  31
  32   JLabel jLabel1 = new JLabel();
  33
  34   JLabel jLabel2 = new JLabel();
  35
  36   JLabel jLabel3 = new JLabel();
  37
  38   protected JComboBox xCombobox = new JComboBox();
  39
  40   protected JComboBox yCombobox = new JComboBox();
  41
  42   protected JComboBox zCombobox = new JComboBox();
  43
  44   protected JButton resetButton = new JButton();
  45
  46   FlowLayout flowLayout1 = new FlowLayout();
  47
  48   BorderLayout borderLayout1 = new BorderLayout();
  49
  50   JMenuBar jMenuBar1 = new JMenuBar();
  51
  52   JMenu fileMenu = new JMenu();
  53
  54   JMenu saveMenu = new JMenu();
  55
  56   JMenuItem eps = new JMenuItem();
  57
  58   JMenuItem png = new JMenuItem();
  59
  60   JMenuItem print = new JMenuItem();
  61
  62   JMenuItem outputValues = new JMenuItem();
  63
  64   JMenuItem outputPoints = new JMenuItem();
  65
  66   JMenuItem outputProjPoints = new JMenuItem();
  67
  68   protected JMenu viewMenu = new JMenu();
  69
  70   protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
  71
  72   JMenuItem bgcolour = new JMenuItem();
  73
  74   JMenuItem originalSeqData = new JMenuItem();
  75
  76   protected JMenu associateViewsMenu = new JMenu();
  77
  78   protected JMenu calcSettings = new JMenu();
  79
  80   protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem();
  81
  82   protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
  83
  84   protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem();
  85
  86   protected JLabel statusBar = new JLabel();
  87
  88   protected GridLayout statusPanelLayout = new GridLayout();
  89
  90   protected JPanel statusPanel = new JPanel();
  91
  92   public GPCAPanel()
  93   {
  94     try
  95     {
  96       jbInit();
  97     } catch (Exception e)
  98     {
  99       e.printStackTrace();
 100     }
 101
 102     for (int i = 1; i < 8; i++)
 103     {
 104       xCombobox.addItem("dim " + i);
 105       yCombobox.addItem("dim " + i);
 106       zCombobox.addItem("dim " + i);
 107     }
 108
 109     setJMenuBar(jMenuBar1);
 110   }
 111
 112   private void jbInit() throws Exception
 113   {
 114     this.getContentPane().setLayout(borderLayout1);
 115     jPanel2.setLayout(flowLayout1);
 116     jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
 117     jLabel1.setText("x=");
 118     jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));
 119     jLabel2.setText("y=");
 120     jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));
 121     jLabel3.setText("z=");
 122     jPanel2.setBackground(Color.white);
 123     jPanel2.setBorder(null);
 124     zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 125     zCombobox.addActionListener(new java.awt.event.ActionListener()
 126     {
 127       public void actionPerformed(ActionEvent e)
 128       {
 129         zCombobox_actionPerformed(e);
 130       }
 131     });
 132     yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 133     yCombobox.addActionListener(new java.awt.event.ActionListener()
 134     {
 135       public void actionPerformed(ActionEvent e)
 136       {
 137         yCombobox_actionPerformed(e);
 138       }
 139     });
 140     xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 141     xCombobox.addActionListener(new java.awt.event.ActionListener()
 142     {
 143       public void actionPerformed(ActionEvent e)
 144       {
 145         xCombobox_actionPerformed(e);
 146       }
 147     });
 148     resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
 149     resetButton.setText(MessageManager.getString("action.reset"));
 150     resetButton.addActionListener(new java.awt.event.ActionListener()
 151     {
 152       @Override
 153       public void actionPerformed(ActionEvent e)
 154       {
 155         resetButton_actionPerformed(e);
 156       }
 157     });
 158     fileMenu.setText(MessageManager.getString("action.file"));
 159     saveMenu.setText(MessageManager.getString("action.save_as"));
 160     eps.setText("EPS");
 161     eps.addActionListener(new ActionListener()
 162     {
 163       public void actionPerformed(ActionEvent e)
 164       {
 165         eps_actionPerformed(e);
 166       }
 167     });
 168     png.setText("PNG");
 169     png.addActionListener(new ActionListener()
 170     {
 171       public void actionPerformed(ActionEvent e)
 172       {
 173         png_actionPerformed(e);
 174       }
 175     });
 176     outputValues.setText(MessageManager.getString("label.output_values"));
 177     outputValues.addActionListener(new ActionListener()
 178     {
 179       public void actionPerformed(ActionEvent e)
 180       {
 181         outputValues_actionPerformed(e);
 182       }
 183     });
 184     outputPoints.setText(MessageManager.getString("label.output_points"));
 185     outputPoints.addActionListener(new ActionListener()
 186     {
 187       public void actionPerformed(ActionEvent e)
 188       {
 189         outputPoints_actionPerformed(e);
 190       }
 191     });
 192     outputProjPoints.setText(MessageManager.getString("label.output_transformed_points") + "...");
 193     outputProjPoints.addActionListener(new ActionListener()
 194     {
 195       public void actionPerformed(ActionEvent e)
 196       {
 197         outputProjPoints_actionPerformed(e);
 198       }
 199     });
 200     print.addActionListener(new ActionListener()
 201     {
 202       public void actionPerformed(ActionEvent e)
 203       {
 204         print_actionPerformed(e);
 205       }
 206     });
 207     viewMenu.setText(MessageManager.getString("aciton.view"));
 208     viewMenu.addMenuListener(new MenuListener()
 209     {
 210       public void menuSelected(MenuEvent e)
 211       {
 212         viewMenu_menuSelected();
 213       }
 214
 215       public void menuDeselected(MenuEvent e)
 216       {
 217       }
 218
 219       public void menuCanceled(MenuEvent e)
 220       {
 221       }
 222     });
 223     showLabels.setText(MessageManager.getString("label.show_labels"));
 224     showLabels.addActionListener(new ActionListener()
 225     {
 226       public void actionPerformed(ActionEvent e)
 227       {
 228         showLabels_actionPerformed(e);
 229       }
 230     });
 231     print.setText(MessageManager.getString("action.print"));
 232     bgcolour.setText(MessageManager.getString("label.background_colour") + "...");
 233     bgcolour.addActionListener(new ActionListener()
 234     {
 235       public void actionPerformed(ActionEvent e)
 236       {
 237         bgcolour_actionPerformed(e);
 238       }
 239     });
 240     originalSeqData.setText(MessageManager.getString("label.input_data"));
 241     originalSeqData.addActionListener(new ActionListener()
 242     {
 243       public void actionPerformed(ActionEvent e)
 244       {
 245         originalSeqData_actionPerformed(e);
 246       }
 247     });
 248     associateViewsMenu.setText(MessageManager.getString("label.associate_nodes_with"));
 249     calcSettings.setText(MessageManager.getString("action.change_params"));
 250     nuclSetting.setText(MessageManager.getString("label.nucleotide_matrix"));
 251     protSetting.setText(MessageManager.getString("label.protein_matrix"));
 252     nuclSetting.addActionListener(new ActionListener()
 253     {
 254
 255       @Override
 256       public void actionPerformed(ActionEvent arg0)
 257       {
 258         nuclSetting_actionPerfomed(arg0);
 259       }
 260     });
 261     protSetting.addActionListener(new ActionListener()
 262     {
 263
 264       @Override
 265       public void actionPerformed(ActionEvent arg0)
 266       {
 267         protSetting_actionPerfomed(arg0);
 268       }
 269     });
 270     jvVersionSetting.setText(MessageManager.getString("label.jalview_pca_calculation"));
 271     jvVersionSetting.addActionListener(new ActionListener()
 272     {
 273       @Override
 274       public void actionPerformed(ActionEvent arg0)
 275       {
 276         jvVersionSetting_actionPerfomed(arg0);
 277       }
 278     });
 279     calcSettings.add(jvVersionSetting);
 280     calcSettings.add(nuclSetting);
 281     calcSettings.add(protSetting);
 282     statusPanel.setLayout(statusPanelLayout);
 283     statusBar.setFont(new java.awt.Font("Verdana", 0, 12));
 284     // statusPanel.setBackground(Color.lightGray);
 285     // statusBar.setBackground(Color.lightGray);
 286     // statusPanel.add(statusBar, null);
 287     JPanel panelBar = new JPanel(new BorderLayout());
 288     panelBar.add(jPanel2, BorderLayout.NORTH);
 289     panelBar.add(statusPanel, BorderLayout.SOUTH);
 290     this.getContentPane().add(panelBar, BorderLayout.SOUTH);
 291     jPanel2.add(jLabel1, null);
 292     jPanel2.add(xCombobox, null);
 293     jPanel2.add(jLabel2, null);
 294     jPanel2.add(yCombobox, null);
 295     jPanel2.add(jLabel3, null);
 296     jPanel2.add(zCombobox, null);
 297     jPanel2.add(resetButton, null);
 298     jMenuBar1.add(fileMenu);
 299     jMenuBar1.add(viewMenu);
 300     jMenuBar1.add(calcSettings);
 301     fileMenu.add(saveMenu);
 302     fileMenu.add(outputValues);
 303     fileMenu.add(print);
 304     fileMenu.add(originalSeqData);
 305     fileMenu.add(outputPoints);
 306     fileMenu.add(outputProjPoints);
 307     saveMenu.add(eps);
 308     saveMenu.add(png);
 309     viewMenu.add(showLabels);
 310     viewMenu.add(bgcolour);
 311     viewMenu.add(associateViewsMenu);
 312   }
 313
 314   protected void resetButton_actionPerformed(ActionEvent e)
 315   {
 316     // TODO Auto-generated method stub
 317
 318   }
 319
 320   protected void protSetting_actionPerfomed(ActionEvent arg0)
 321   {
 322     // TODO Auto-generated method stub
 323
 324   }
 325
 326   protected void nuclSetting_actionPerfomed(ActionEvent arg0)
 327   {
 328     // TODO Auto-generated method stub
 329
 330   }
 331
 332   protected void outputPoints_actionPerformed(ActionEvent e)
 333   {
 334     // TODO Auto-generated method stub
 335
 336   }
 337
 338   protected void outputProjPoints_actionPerformed(ActionEvent e)
 339   {
 340     // TODO Auto-generated method stub
 341
 342   }
 343
 344   protected void xCombobox_actionPerformed(ActionEvent e)
 345   {
 346   }
 347
 348   protected void yCombobox_actionPerformed(ActionEvent e)
 349   {
 350   }
 351
 352   protected void zCombobox_actionPerformed(ActionEvent e)
 353   {
 354   }
 355
 356   public void eps_actionPerformed(ActionEvent e)
 357   {
 358
 359   }
 360
 361   public void png_actionPerformed(ActionEvent e)
 362   {
 363
 364   }
 365
 366   public void outputValues_actionPerformed(ActionEvent e)
 367   {
 368
 369   }
 370
 371   public void print_actionPerformed(ActionEvent e)
 372   {
 373
 374   }
 375
 376   public void showLabels_actionPerformed(ActionEvent e)
 377   {
 378
 379   }
 380
 381   public void bgcolour_actionPerformed(ActionEvent e)
 382   {
 383
 384   }
 385
 386   public void originalSeqData_actionPerformed(ActionEvent e)
 387   {
 388
 389   }
 390
 391   public void viewMenu_menuSelected()
 392   {
 393
 394   }
 395
 396   protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
 397   {
 398     // TODO Auto-generated method stub
 399
 400   }
 401 }