src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java

   1 /*
   2  * This class was automatically generated with
   3  * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
   4  * Schema.
   5  * $Id$
   6  */
   7
   8 package jalview.schemabinding.version2.descriptors;
   9
  10 //---------------------------------/
  11 //- Imported classes and packages -/
  12 //---------------------------------/
  13
  14 import jalview.schemabinding.version2.SequenceSet;
  15
  16 /**
  17  * Class SequenceSetDescriptor.
  18  *
  19  * @version $Revision$ $Date$
  20  */
  21 public class SequenceSetDescriptor extends
  22         org.exolab.castor.xml.util.XMLClassDescriptorImpl
  23 {
  24
  25   // --------------------------/
  26   // - Class/Member Variables -/
  27   // --------------------------/
  28
  29   /**
  30    * Field _elementDefinition.
  31    */
  32   private boolean _elementDefinition;
  33
  34   /**
  35    * Field _nsPrefix.
  36    */
  37   private java.lang.String _nsPrefix;
  38
  39   /**
  40    * Field _nsURI.
  41    */
  42   private java.lang.String _nsURI;
  43
  44   /**
  45    * Field _xmlName.
  46    */
  47   private java.lang.String _xmlName;
  48
  49   // ----------------/
  50   // - Constructors -/
  51   // ----------------/
  52
  53   public SequenceSetDescriptor()
  54   {
  55     super();
  56     _nsURI = "www.vamsas.ac.uk/jalview/version2";
  57     _xmlName = "SequenceSet";
  58     _elementDefinition = true;
  59
  60     // -- set grouping compositor
  61     setCompositorAsSequence();
  62     org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
  63     org.exolab.castor.mapping.FieldHandler handler = null;
  64     org.exolab.castor.xml.FieldValidator fieldValidator = null;
  65     // -- initialize attribute descriptors
  66
  67     // -- _gapChar
  68     desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
  69             java.lang.String.class, "_gapChar", "gapChar",
  70             org.exolab.castor.xml.NodeType.Attribute);
  71     desc.setImmutable(true);
  72     handler = new org.exolab.castor.xml.XMLFieldHandler()
  73     {
  74       public java.lang.Object getValue(java.lang.Object object)
  75               throws IllegalStateException
  76       {
  77         SequenceSet target = (SequenceSet) object;
  78         return target.getGapChar();
  79       }
  80
  81       public void setValue(java.lang.Object object, java.lang.Object value)
  82               throws IllegalStateException, IllegalArgumentException
  83       {
  84         try
  85         {
  86           SequenceSet target = (SequenceSet) object;
  87           target.setGapChar((java.lang.String) value);
  88         } catch (java.lang.Exception ex)
  89         {
  90           throw new IllegalStateException(ex.toString());
  91         }
  92       }
  93
  94       public java.lang.Object newInstance(java.lang.Object parent)
  95       {
  96         return null;
  97       }
  98     };
  99     desc.setHandler(handler);
 100     desc.setRequired(true);
 101     desc.setMultivalued(false);
 102     addFieldDescriptor(desc);
 103
 104     // -- validation code for: _gapChar
 105     fieldValidator = new org.exolab.castor.xml.FieldValidator();
 106     fieldValidator.setMinOccurs(1);
 107     { // -- local scope
 108       org.exolab.castor.xml.validators.StringValidator typeValidator;
 109       typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 110       fieldValidator.setValidator(typeValidator);
 111       typeValidator.setWhiteSpace("preserve");
 112     }
 113     desc.setValidator(fieldValidator);
 114     // -- _datasetId
 115     desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
 116             java.lang.String.class, "_datasetId", "datasetId",
 117             org.exolab.castor.xml.NodeType.Attribute);
 118     desc.setImmutable(true);
 119     handler = new org.exolab.castor.xml.XMLFieldHandler()
 120     {
 121       public java.lang.Object getValue(java.lang.Object object)
 122               throws IllegalStateException
 123       {
 124         SequenceSet target = (SequenceSet) object;
 125         return target.getDatasetId();
 126       }
 127
 128       public void setValue(java.lang.Object object, java.lang.Object value)
 129               throws IllegalStateException, IllegalArgumentException
 130       {
 131         try
 132         {
 133           SequenceSet target = (SequenceSet) object;
 134           target.setDatasetId((java.lang.String) value);
 135         } catch (java.lang.Exception ex)
 136         {
 137           throw new IllegalStateException(ex.toString());
 138         }
 139       }
 140
 141       public java.lang.Object newInstance(java.lang.Object parent)
 142       {
 143         return null;
 144       }
 145     };
 146     desc.setHandler(handler);
 147     desc.setMultivalued(false);
 148     addFieldDescriptor(desc);
 149
 150     // -- validation code for: _datasetId
 151     fieldValidator = new org.exolab.castor.xml.FieldValidator();
 152     { // -- local scope
 153       org.exolab.castor.xml.validators.StringValidator typeValidator;
 154       typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 155       fieldValidator.setValidator(typeValidator);
 156       typeValidator.setWhiteSpace("preserve");
 157     }
 158     desc.setValidator(fieldValidator);
 159     // -- initialize element descriptors
 160
 161     // -- _sequenceList
 162     desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
 163             jalview.schemabinding.version2.Sequence.class, "_sequenceList",
 164             "Sequence", org.exolab.castor.xml.NodeType.Element);
 165     handler = new org.exolab.castor.xml.XMLFieldHandler()
 166     {
 167       public java.lang.Object getValue(java.lang.Object object)
 168               throws IllegalStateException
 169       {
 170         SequenceSet target = (SequenceSet) object;
 171         return target.getSequence();
 172       }
 173
 174       public void setValue(java.lang.Object object, java.lang.Object value)
 175               throws IllegalStateException, IllegalArgumentException
 176       {
 177         try
 178         {
 179           SequenceSet target = (SequenceSet) object;
 180           target.addSequence((jalview.schemabinding.version2.Sequence) value);
 181         } catch (java.lang.Exception ex)
 182         {
 183           throw new IllegalStateException(ex.toString());
 184         }
 185       }
 186
 187       public void resetValue(Object object) throws IllegalStateException,
 188               IllegalArgumentException
 189       {
 190         try
 191         {
 192           SequenceSet target = (SequenceSet) object;
 193           target.removeAllSequence();
 194         } catch (java.lang.Exception ex)
 195         {
 196           throw new IllegalStateException(ex.toString());
 197         }
 198       }
 199
 200       public java.lang.Object newInstance(java.lang.Object parent)
 201       {
 202         return new jalview.schemabinding.version2.Sequence();
 203       }
 204     };
 205     desc.setHandler(handler);
 206     desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 207     desc.setMultivalued(true);
 208     addFieldDescriptor(desc);
 209
 210     // -- validation code for: _sequenceList
 211     fieldValidator = new org.exolab.castor.xml.FieldValidator();
 212     fieldValidator.setMinOccurs(0);
 213     { // -- local scope
 214     }
 215     desc.setValidator(fieldValidator);
 216     // -- _annotationList
 217     desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
 218             jalview.schemabinding.version2.Annotation.class,
 219             "_annotationList", "Annotation",
 220             org.exolab.castor.xml.NodeType.Element);
 221     handler = new org.exolab.castor.xml.XMLFieldHandler()
 222     {
 223       public java.lang.Object getValue(java.lang.Object object)
 224               throws IllegalStateException
 225       {
 226         SequenceSet target = (SequenceSet) object;
 227         return target.getAnnotation();
 228       }
 229
 230       public void setValue(java.lang.Object object, java.lang.Object value)
 231               throws IllegalStateException, IllegalArgumentException
 232       {
 233         try
 234         {
 235           SequenceSet target = (SequenceSet) object;
 236           target.addAnnotation((jalview.schemabinding.version2.Annotation) value);
 237         } catch (java.lang.Exception ex)
 238         {
 239           throw new IllegalStateException(ex.toString());
 240         }
 241       }
 242
 243       public void resetValue(Object object) throws IllegalStateException,
 244               IllegalArgumentException
 245       {
 246         try
 247         {
 248           SequenceSet target = (SequenceSet) object;
 249           target.removeAllAnnotation();
 250         } catch (java.lang.Exception ex)
 251         {
 252           throw new IllegalStateException(ex.toString());
 253         }
 254       }
 255
 256       public java.lang.Object newInstance(java.lang.Object parent)
 257       {
 258         return new jalview.schemabinding.version2.Annotation();
 259       }
 260     };
 261     desc.setHandler(handler);
 262     desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 263     desc.setMultivalued(true);
 264     addFieldDescriptor(desc);
 265
 266     // -- validation code for: _annotationList
 267     fieldValidator = new org.exolab.castor.xml.FieldValidator();
 268     fieldValidator.setMinOccurs(0);
 269     { // -- local scope
 270     }
 271     desc.setValidator(fieldValidator);
 272     // -- _sequenceSetPropertiesList
 273     desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
 274             jalview.schemabinding.version2.SequenceSetProperties.class,
 275             "_sequenceSetPropertiesList", "sequenceSetProperties",
 276             org.exolab.castor.xml.NodeType.Element);
 277     handler = new org.exolab.castor.xml.XMLFieldHandler()
 278     {
 279       public java.lang.Object getValue(java.lang.Object object)
 280               throws IllegalStateException
 281       {
 282         SequenceSet target = (SequenceSet) object;
 283         return target.getSequenceSetProperties();
 284       }
 285
 286       public void setValue(java.lang.Object object, java.lang.Object value)
 287               throws IllegalStateException, IllegalArgumentException
 288       {
 289         try
 290         {
 291           SequenceSet target = (SequenceSet) object;
 292           target.addSequenceSetProperties((jalview.schemabinding.version2.SequenceSetProperties) value);
 293         } catch (java.lang.Exception ex)
 294         {
 295           throw new IllegalStateException(ex.toString());
 296         }
 297       }
 298
 299       public void resetValue(Object object) throws IllegalStateException,
 300               IllegalArgumentException
 301       {
 302         try
 303         {
 304           SequenceSet target = (SequenceSet) object;
 305           target.removeAllSequenceSetProperties();
 306         } catch (java.lang.Exception ex)
 307         {
 308           throw new IllegalStateException(ex.toString());
 309         }
 310       }
 311
 312       public java.lang.Object newInstance(java.lang.Object parent)
 313       {
 314         return new jalview.schemabinding.version2.SequenceSetProperties();
 315       }
 316     };
 317     desc.setHandler(handler);
 318     desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 319     desc.setMultivalued(true);
 320     addFieldDescriptor(desc);
 321
 322     // -- validation code for: _sequenceSetPropertiesList
 323     fieldValidator = new org.exolab.castor.xml.FieldValidator();
 324     fieldValidator.setMinOccurs(0);
 325     { // -- local scope
 326     }
 327     desc.setValidator(fieldValidator);
 328     // -- _alcodonFrameList
 329     desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
 330             jalview.schemabinding.version2.AlcodonFrame.class,
 331             "_alcodonFrameList", "AlcodonFrame",
 332             org.exolab.castor.xml.NodeType.Element);
 333     handler = new org.exolab.castor.xml.XMLFieldHandler()
 334     {
 335       public java.lang.Object getValue(java.lang.Object object)
 336               throws IllegalStateException
 337       {
 338         SequenceSet target = (SequenceSet) object;
 339         return target.getAlcodonFrame();
 340       }
 341
 342       public void setValue(java.lang.Object object, java.lang.Object value)
 343               throws IllegalStateException, IllegalArgumentException
 344       {
 345         try
 346         {
 347           SequenceSet target = (SequenceSet) object;
 348           target.addAlcodonFrame((jalview.schemabinding.version2.AlcodonFrame) value);
 349         } catch (java.lang.Exception ex)
 350         {
 351           throw new IllegalStateException(ex.toString());
 352         }
 353       }
 354
 355       public void resetValue(Object object) throws IllegalStateException,
 356               IllegalArgumentException
 357       {
 358         try
 359         {
 360           SequenceSet target = (SequenceSet) object;
 361           target.removeAllAlcodonFrame();
 362         } catch (java.lang.Exception ex)
 363         {
 364           throw new IllegalStateException(ex.toString());
 365         }
 366       }
 367
 368       public java.lang.Object newInstance(java.lang.Object parent)
 369       {
 370         return new jalview.schemabinding.version2.AlcodonFrame();
 371       }
 372     };
 373     desc.setHandler(handler);
 374     desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 375     desc.setMultivalued(true);
 376     addFieldDescriptor(desc);
 377
 378     // -- validation code for: _alcodonFrameList
 379     fieldValidator = new org.exolab.castor.xml.FieldValidator();
 380     fieldValidator.setMinOccurs(0);
 381     { // -- local scope
 382     }
 383     desc.setValidator(fieldValidator);
 384   }
 385
 386   // -----------/
 387   // - Methods -/
 388   // -----------/
 389
 390   /**
 391    * Method getAccessMode.
 392    *
 393    * @return the access mode specified for this class.
 394    */
 395   public org.exolab.castor.mapping.AccessMode getAccessMode()
 396   {
 397     return null;
 398   }
 399
 400   /**
 401    * Method getIdentity.
 402    *
 403    * @return the identity field, null if this class has no identity.
 404    */
 405   public org.exolab.castor.mapping.FieldDescriptor getIdentity()
 406   {
 407     return super.getIdentity();
 408   }
 409
 410   /**
 411    * Method getJavaClass.
 412    *
 413    * @return the Java class represented by this descriptor.
 414    */
 415   public java.lang.Class getJavaClass()
 416   {
 417     return jalview.schemabinding.version2.SequenceSet.class;
 418   }
 419
 420   /**
 421    * Method getNameSpacePrefix.
 422    *
 423    * @return the namespace prefix to use when marshaling as XML.
 424    */
 425   public java.lang.String getNameSpacePrefix()
 426   {
 427     return _nsPrefix;
 428   }
 429
 430   /**
 431    * Method getNameSpaceURI.
 432    *
 433    * @return the namespace URI used when marshaling and unmarshaling as XML.
 434    */
 435   public java.lang.String getNameSpaceURI()
 436   {
 437     return _nsURI;
 438   }
 439
 440   /**
 441    * Method getValidator.
 442    *
 443    * @return a specific validator for the class described by this
 444    *         ClassDescriptor.
 445    */
 446   public org.exolab.castor.xml.TypeValidator getValidator()
 447   {
 448     return this;
 449   }
 450
 451   /**
 452    * Method getXMLName.
 453    *
 454    * @return the XML Name for the Class being described.
 455    */
 456   public java.lang.String getXMLName()
 457   {
 458     return _xmlName;
 459   }
 460
 461   /**
 462    * Method isElementDefinition.
 463    *
 464    * @return true if XML schema definition of this Class is that of a global
 465    *         element or element with anonymous type definition.
 466    */
 467   public boolean isElementDefinition()
 468   {
 469     return _elementDefinition;
 470   }
 471
 472 }