src/jalview/ws/jws2/JabaWsParamTest.java

   1 package jalview.ws.jws2;
   2
   3 import jalview.gui.WsJobParameters;
   4 import jalview.util.MessageManager;
   5 import jalview.ws.api.ServiceWithParameters;
   6 import jalview.ws.jws2.jabaws2.Jws2Instance;
   7
   8 import java.awt.BorderLayout;
   9 import java.awt.event.WindowEvent;
  10 import java.awt.event.WindowListener;
  11 import java.util.Iterator;
  12 import java.util.List;
  13 import java.util.Vector;
  14
  15 import javax.swing.JFrame;
  16 import javax.swing.JPanel;
  17
  18 import compbio.metadata.Option;
  19 import compbio.metadata.Parameter;
  20 import compbio.metadata.Preset;
  21 import compbio.metadata.PresetManager;
  22
  23 public class JabaWsParamTest
  24 {
  25
  26   /**
  27    * testing method - grab a service and parameter set and show the window
  28    *
  29    * @param args
  30    */
  31   public static void main(String[] args)
  32   {
  33     jalview.ws.jws2.Jws2Discoverer disc = jalview.ws.jws2.Jws2Discoverer
  34             .getInstance();
  35     int p = 0;
  36     if (args.length > 0)
  37     {
  38       Vector<String> services = new Vector<>();
  39       services.addElement(args[p++]);
  40       Jws2Discoverer.getInstance().setServiceUrls(services);
  41     }
  42     try
  43     {
  44       disc.run();
  45     } catch (Exception e)
  46     {
  47       System.err.println("Aborting. Problem discovering services.");
  48       e.printStackTrace();
  49       return;
  50     }
  51     Jws2Instance lastserv = null;
  52     for (ServiceWithParameters service : disc.getServices())
  53     {
  54       // this will fail for non-JABAWS services !
  55       lastserv = (Jws2Instance) service;
  56       if (p >= args.length || service.getName().equalsIgnoreCase(args[p]))
  57       {
  58         if (lastserv != null)
  59         {
  60           List<Preset> prl = null;
  61           Preset pr = null;
  62           if (++p < args.length)
  63           {
  64             PresetManager prman = lastserv.getPresets();
  65             if (prman != null)
  66             {
  67               pr = prman.getPresetByName(args[p]);
  68               if (pr == null)
  69               {
  70                 // just grab the last preset.
  71                 prl = prman.getPresets();
  72               }
  73             }
  74           }
  75           else
  76           {
  77             PresetManager prman = lastserv.getPresets();
  78             if (prman != null)
  79             {
  80               prl = prman.getPresets();
  81             }
  82           }
  83           Iterator<Preset> en = (prl == null) ? null : prl.iterator();
  84           while (en != null && en.hasNext())
  85           {
  86             if (en != null)
  87             {
  88               if (!en.hasNext())
  89               {
  90                 en = prl.iterator();
  91               }
  92               pr = en.next();
  93             }
  94             {
  95               System.out.println("Testing opts dupes for "
  96                       + lastserv.getUri() + " : " + lastserv.getActionText()
  97                       + ":" + pr.getName());
  98               List<Option> rg = lastserv.getRunnerConfig().getOptions();
  99               for (Option o : rg)
 100               {
 101                 try
 102                 {
 103                   Option cpy = jalview.ws.jws2.ParameterUtils.copyOption(o);
 104                 } catch (Exception e)
 105                 {
 106                   System.err.println("Failed to copy " + o.getName());
 107                   e.printStackTrace();
 108                 } catch (Error e)
 109                 {
 110                   System.err.println("Failed to copy " + o.getName());
 111                   e.printStackTrace();
 112                 }
 113               }
 114             }
 115             {
 116               System.out.println("Testing param dupes:");
 117               List<Parameter> rg = lastserv.getRunnerConfig()
 118                       .getParameters();
 119               for (Parameter o : rg)
 120               {
 121                 try
 122                 {
 123                   Parameter cpy = jalview.ws.jws2.ParameterUtils
 124                           .copyParameter(o);
 125                 } catch (Exception e)
 126                 {
 127                   System.err.println("Failed to copy " + o.getName());
 128                   e.printStackTrace();
 129                 } catch (Error e)
 130                 {
 131                   System.err.println("Failed to copy " + o.getName());
 132                   e.printStackTrace();
 133                 }
 134               }
 135             }
 136             {
 137               System.out.println("Testing param write:");
 138               List<String> writeparam = null, readparam = null;
 139               try
 140               {
 141                 writeparam = jalview.ws.jws2.ParameterUtils
 142                         .writeParameterSet(
 143                                 pr.getArguments(lastserv.getRunnerConfig()),
 144                                 " ");
 145                 System.out.println("Testing param read :");
 146                 List<Option> pset = jalview.ws.jws2.ParameterUtils
 147                         .processParameters(writeparam,
 148                                 lastserv.getRunnerConfig(), " ");
 149                 readparam = jalview.ws.jws2.ParameterUtils
 150                         .writeParameterSet(pset, " ");
 151                 Iterator<String> o = pr.getOptions().iterator(),
 152                         s = writeparam.iterator(), t = readparam.iterator();
 153                 boolean failed = false;
 154                 while (s.hasNext() && t.hasNext())
 155                 {
 156                   String on = o.next(), sn = s.next(), st = t.next();
 157                   if (!sn.equals(st))
 158                   {
 159                     System.out.println(
 160                             "Original was " + on + " Phase 1 wrote " + sn
 161                                     + "\tPhase 2 wrote " + st);
 162                     failed = true;
 163                   }
 164                 }
 165                 if (failed)
 166                 {
 167                   System.out.println(
 168                           "Original parameters:\n" + pr.getOptions());
 169                   System.out.println(
 170                           "Wrote parameters in first set:\n" + writeparam);
 171                   System.out.println(
 172                           "Wrote parameters in second set:\n" + readparam);
 173
 174                 }
 175               } catch (Exception e)
 176               {
 177                 e.printStackTrace();
 178               }
 179             }
 180             WsJobParameters pgui = new WsJobParameters(null, lastserv,
 181                     new JabaPreset(lastserv, pr), null);
 182             JFrame jf = new JFrame(MessageManager
 183                     .formatMessage("label.ws_parameters_for", new String[]
 184                     { lastserv.getActionText() }));
 185             JPanel cont = new JPanel(new BorderLayout());
 186             pgui.validate();
 187             cont.setPreferredSize(pgui.getPreferredSize());
 188             cont.add(pgui, BorderLayout.CENTER);
 189             jf.setLayout(new BorderLayout());
 190             jf.add(cont, BorderLayout.CENTER);
 191             jf.validate();
 192             final Thread thr = Thread.currentThread();
 193             jf.addWindowListener(new WindowListener()
 194             {
 195
 196               @Override
 197               public void windowActivated(WindowEvent e)
 198               {
 199                 // TODO Auto-generated method stub
 200
 201               }
 202
 203               @Override
 204               public void windowClosed(WindowEvent e)
 205               {
 206               }
 207
 208               @Override
 209               public void windowClosing(WindowEvent e)
 210               {
 211                 thr.interrupt();
 212
 213               }
 214
 215               @Override
 216               public void windowDeactivated(WindowEvent e)
 217               {
 218                 // TODO Auto-generated method stub
 219
 220               }
 221
 222               @Override
 223               public void windowDeiconified(WindowEvent e)
 224               {
 225                 // TODO Auto-generated method stub
 226
 227               }
 228
 229               @Override
 230               public void windowIconified(WindowEvent e)
 231               {
 232                 // TODO Auto-generated method stub
 233
 234               }
 235
 236               @Override
 237               public void windowOpened(WindowEvent e)
 238               {
 239                 // TODO Auto-generated method stub
 240
 241               }
 242
 243             });
 244             jf.setVisible(true);
 245             boolean inter = false;
 246             while (!inter)
 247             {
 248               try
 249               {
 250                 Thread.sleep(10000);
 251               } catch (Exception e)
 252               {
 253                 inter = true;
 254               }
 255               ;
 256             }
 257             jf.dispose();
 258           }
 259         }
 260       }
 261     }
 262   }
 263
 264 }