src/jalview/ws/slivkaws/SlivkaJPredServiceInstance.java

   1 package jalview.ws.slivkaws;
   2
   3 import java.io.IOError;
   4 import java.io.IOException;
   5 import java.util.List;
   6
   7 import jalview.datamodel.AlignmentI;
   8 import jalview.datamodel.SequenceI;
   9 import jalview.ws.api.JPredMutlipleAlignmentServiceI;
  10 import jalview.ws.api.JobId;
  11 import uk.ac.dundee.compbio.slivkaclient.RemoteFile;
  12 import uk.ac.dundee.compbio.slivkaclient.SlivkaClient;
  13 import uk.ac.dundee.compbio.slivkaclient.SlivkaService;
  14
  15 public class SlivkaJPredServiceInstance extends SlivkaWSInstance
  16     implements JPredMutlipleAlignmentServiceI
  17 {
  18
  19   public SlivkaJPredServiceInstance(SlivkaClient client,
  20       SlivkaService service, String action)
  21   {
  22     super(client, service, action);
  23     style = ServiceClient.JPREDWSCLIENT;
  24   }
  25
  26   @Override
  27   public JobId align(List<SequenceI> sequences) throws Throwable
  28   {
  29     return super.submit(sequences, null, null);
  30   }
  31
  32   @Override
  33   public AlignmentI getResult(JobId jobId) throws Exception
  34   {
  35     List<RemoteFile> files;
  36     try {
  37       files = client.getJobResults(jobId.getJobId());
  38       for (RemoteFile f : files) {
  39         return readAlignment(f);
  40       }
  41     }
  42     catch (IOException e) {
  43       throw new IOError(e);
  44     }
  45     return null;
  46   }
  47 }