test/jalview/io/HMMAlignmentTest.sto

   1 # STOCKHOLM 1.0
   2 #=GS Q7XA98_TRIPR/1-152   DR UNIPROT ; Q7XA98
   3 #=GS FER1_PEA/1-149       DR UNIPROT ; P09911
   4 #=GS Q93XJ9_SOLTU/1-144   DR UNIPROT ; Q93XJ9
   5 #=GS FER_CAPAN/1-144      DR UNIPROT ; Q9ZTS2
   6 #=GS FER1_SOLLC/1-144     DR UNIPROT ; Q43517
   7 #=GS FER_CAPAA/1-97       DR UNIPROT ; P83527
   8 FER_CAPAA/1-97             ------------------------------------------------------------------------ASYKVKLITPDGPIEFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG-
   9 FER_CAPAN/1-144            MA------SVSATMISTSFMPRKPAVTSL-KPIPNVGE--ALFGLKS-A--NGGKVTCMASYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG-
  10 FER1_SOLLC/1-144           -------------MA------SISGTMISTSFLPRKPAVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMASYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEELTA-
  11 Q93XJ9_SOLTU/1-144         --------MA------SISGTMISTSFLPRKPVVTSL-KAISNVGE--ALFGLKS-G--RNGRITCMASYKVKLITPDGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGKFLDDDQEAAGFVLTCVAYPKCDVTIETHKEEELTA-
  12 FER1_PEA/1-149             -------------MATT---PALYGTAVSTSFLRTQPMPMSV-TTTKAFSN--GFLGLKT-SLKRGDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLTA-
  13 Q7XA98_TRIPR/1-152         -------------MATT---PALYGTAVSTSFMRRQPVPMSV-ATTTTTKAFPSGFGLKSVSTKRGDLAVAMATYKVKLITPEGPQEFDCPDDVYILDHAEEVGIELPYSCRAGSCSSCAGKVVNGNVNQEDGSFLDDEQIEGGWVLTCVAFPTSDVTIETHKEEELTA-
  14 #=GC SS_cons                                                                              EEE    EEEEEEEE    HHHHH          e    e  e EE     EE          HHHH E   e  EE   EEEEE
  15 #=GC Iron_Sulphur_Contacts -------------------------------------------------------------------------------------------------e----e--e-----------------------------e---------------------
  16 //