test/jalview/io/testProps.jvprops

   1 #---JalviewX Properties File---
   2 #Fri Apr 25 09:54:25 BST 2014
   3 #
   4 BACKUPFILES_ROLL_MAX=2
   5 BACKUPFILES_REVERSE_ORDER=false
   6 BACKUPFILES_SUFFIX=_BACKUPFILESTESTTMP%n
   7 BACKUPFILES_CONFIRM_DELETE_OLD=false
   8 BACKUPFILES_NO_MAX=false
   9 BACKUPFILES_ENABLED=true
  10 BACKUPFILES_SUFFIX_DIGITS=8
  11 SCREEN_Y=768
  12 SCREEN_X=936
  13 SHOW_WSDISCOVERY_ERRORS=true
  14 LATEST_VERSION=2.8.0b1
  15 SHOW_CONSERVATION=true
  16 JALVIEW_RSS_WINDOW_SCREEN_WIDTH=550
  17 JAVA_CONSOLE_SCREEN_WIDTH=450
  18 LAST_DIRECTORY=/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples
  19 ID_ITALICS=true
  20 SORT_ALIGNMENT=No sort
  21 SHOW_IDENTITY=true
  22 WSMENU_BYHOST=false
  23 SEQUENCE_LINKS=EMBL-EBI Search|http\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$
  24 SHOW_FULLSCREEN=false
  25 RECENT_URL=http\://www.jalview.org/examples/exampleFile_2_7.jar
  26 FONT_NAME=SansSerif
  27 BLC_JVSUFFIX=true
  28 VERSION_CHECK=false
  29 YEAR=2011
  30 SHOW_DBREFS_TOOLTIP=true
  31 MSF_JVSUFFIX=true
  32 SCREENGEOMETRY_HEIGHT=1600
  33 JAVA_CONSOLE_SCREEN_Y=475
  34 JAVA_CONSOLE_SCREEN_X=830
  35 PFAM_JVSUFFIX=true
  36 PIR_JVSUFFIX=true
  37 STARTUP_FILE=http\://www.jalview.org/examples/exampleFile_2_3.jar
  38 JAVA_CONSOLE_SCREEN_HEIGHT=162
  39 PIR_MODELLER=false
  40 GAP_SYMBOL=-
  41 SHOW_QUALITY=true
  42 SHOW_OCCUPANCY=true
  43 SHOW_GROUP_CONSERVATION=false
  44 SHOW_JWS2_SERVICES=true
  45 SHOW_NPFEATS_TOOLTIP=true
  46 FONT_STYLE=plain
  47 ANTI_ALIAS=false
  48 SORT_BY_TREE=false
  49 RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='FASTA',writeasfile$
  50 AUTHORFNAMES=Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton
  51 JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=328
  52 SHOW_GROUP_CONSENSUS=false
  53 SHOW_CONSENSUS_HISTOGRAM=true
  54 SHOW_OVERVIEW=false
  55 AUTHORS=J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  56 FIGURE_AUTOIDWIDTH=false
  57 SCREEN_WIDTH=900
  58 ANNOTATIONCOLOUR_MIN=ffc800
  59 SHOW_STARTUP_FILE=false
  60 RECENT_FILE=examples/uniref50.fa\t/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples/RF00031_folded.stk\t/Volumes/Data/Users/jimp/bs_ig_mult.out
  61 DEFAULT_FILE_FORMAT=FASTA
  62 SHOW_JAVA_CONSOLE=false
  63 VERSION=2.8b1
  64 FIGURE_USERIDWIDTH=
  65 WSMENU_BYTYPE=false
  66 DEFAULT_COLOUR=None
  67 NOQUESTIONNAIRES=true
  68 JALVIEW_NEWS_RSS_LASTMODIFIED=Apr 23, 2014 2\:53\:26 PM
  69 BUILD_DATE=01 November 2013
  70 PILEUP_JVSUFFIX=true
  71 SHOW_CONSENSUS_LOGO=false
  72 SCREENGEOMETRY_WIDTH=2560
  73 SHOW_ANNOTATIONS=true
  74 JALVIEW_RSS_WINDOW_SCREEN_Y=0
  75 USAGESTATS=false
  76 JALVIEW_RSS_WINDOW_SCREEN_X=0
  77 SHOW_UNCONSERVED=false
  78 SHOW_JVSUFFIX=true
  79 DAS_LOCAL_SOURCE=
  80 SCREEN_HEIGHT=650
  81 ANNOTATIONCOLOUR_MAX=ff0000
  82 AUTO_CALC_CONSENSUS=true
  83 FASTA_JVSUFFIX=true
  84 DAS_ACTIVE_SOURCE=uniprot\t
  85 JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws
  86 PAD_GAPS=false
  87 CLUSTAL_JVSUFFIX=true
  88 SHOW_ENFIN_SERVICES=true
  89 FONT_SIZE=10
  90 RIGHT_ALIGN_IDS=false
  91 USE_PROXY=false
  92 WRAP_ALIGNMENT=false
  93 #DAS_REGISTRY_URL=http\://www.dasregistry.org/das/ # retired 01/05/2015
  94 DAS_REGISTRY_URL=http\://www.ebi.ac.uk/das-srv/registry/das/
  95 logs.Jalview.level=DEBUG