git://source.jalview.org / jalview.git / blobdiff
? search:
summary | shortlog | log | commit | commitdiff | tree
raw | inline | side by side
merge develop
[jalview.git] / examples / testdata / phyre2results / 56da5616b4559c93 / aligs / c1t3qD_.53.alig.html
diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1t3qD_.53.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1t3qD_.53.alig.html
new file mode 100644 (file)
index 0000000..24d2ba2
--- /dev/null
+++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1t3qD_.53.alig.html
@@ -0,0 +1,203 @@
+<html><head>
+<title>Phyre 2 alignment of FER_CAPAN_1-144 with c1t3qD_</title>
+<style id="style1" type="text/css">      .notIpad{display:inline;}    </style>
+<link type="text/css" rel="stylesheet" href="../css/main.css">
+<script type="text/javascript"
+src="http://www.sbg.bio.ic.ac.uk/phyre2/html/jmol/jsmol/JSmol.min.js"></script>
+<script type="text/javascript">
+
+var jmolApplet0 = null;
+
+var JSInfo = {
+  addSelectionOptions: false,
+  color: "#000000",
+  debug: false,
+  deferApplet: false,
+  memoryLimit: 512,            // Java only
+  j2sPath: "http://www.sbg.bio.ic.ac.uk/phyre2/html/jmol/jsmol/j2s",
+  // HTML5 only
+  memoryLimit: 512,            // Java only
+  readyFunction: null,
+  script: null,
+  disableInitialConsole: true,
+  disableJ2SLoadMonitor: false,
+  src: null,
+  use: "HTML5",  
+  width: 400,
+  height: 400
+}; 
+
+Jmol.setDocument(0);
+Jmol.getApplet("jmolApplet0", JSInfo)
+
+function init_jmol(){
+    var jmol_div = document.getElementById('jmol');
+    if(jmol_div.innerHTML == ""){
+        jmol_div.innerHTML = Jmol.getAppletHtml(jmolApplet0);
+        //eval the script added by jsmol to kickstart it.
+        eval(jmol_div.getElementsByTagName("script")[0].innerHTML);
+        Jmol.script(jmolApplet0, "load ../c1t3qD_.53.pdb; select all; cpk off; wireframe off; cartoon on; color group; set antialiasDisplay ON");  
+
+    }
+}
+
+</script>
+
+<script type="text/javascript" src="../css/skinnytip.js">
+<!-- SkinnyTip (c) Elliott Brueggeman --></script>
+<script type="text/javascript">
+function toggle(thisname)
+{
+   tr=document.getElementsByTagName('tr');
+   for (i=0;i<tr.length;i++)
+   {
+      if (tr[i].getAttribute(thisname))
+      {
+         if(tr[i].style.display=='none')
+         {
+            tr[i].style.display ='';
+         }
+         else
+         {
+            tr[i].style.display='none';
+         }
+       }
+   }
+}
+</script>
+<script language="JavaScript">  function expand(param){param.style.display=(param.style.display=="none")?"":"none";}</script>
+</head>
+<body>
+<form ENCTYPE="multipart/form-data" METHOD="POST" ACTION="../../../webscripts/jobmonitor.cgi"><table class="midshade" width=100% border=0 frame=below><tr>
+<td align=left><a href="../summary.html">Return to main results</a></td>
+<td align=right>Retrieve Phyre Job Id <input type="text" SIZE=30 NAME="jobid"><input type="submit" value="Fetch" name="fetch"></font>
+</td></tr></table></form>
+<div id="tiplayer" style="position:absolute; visibility:hidden; z-index:10000;"></div>
+<center><p><table width=70% border=0 cellspacing=1 cellpadding=1><tr><td><img src="../webimg/playing.png"></td>
+<td><table class="midshade"><tr><td class="darkshade" style="width:12em;">Job Description</td><td colspan=3>FER_CAPAN_1-144</td></tr><tr><td class="darkshade">Confidence</td><td>98.01%</td><td class="darkshade">Date</td><td>Wed Jan  4 12:02:18 GMT 2017</td></tr>
+<tr><td class="darkshade">Rank</td><td>53</td><td class="darkshade">Aligned Residues</td><td>48</td></tr>
+<tr><td class="darkshade">% Identity</td><td>23%</td><td class="darkshade">Template</td><td>c1t3qD_</td></tr>
+<tr><td class="darkshade">PDB info</td>
+<td><b>PDB header:</b>oxidoreductase</td><td><b>Chain: </b>D: <b>PDB Molecule:</b>quinoline 2-oxidoreductase small subunit;</td><td>
+<b>PDBTitle:</b> crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
+</td></tr>
+<tr><td class="darkshade">Resolution</td><td colspan=3>1.80 &#8491</td></tr>
+</table>
+</tr></table></p>
+<p><button onclick="toggle('confidence');">Show / Hide SS confidence</button></p>
+<p><button onclick="toggle('consqual');">Show / Hide Conservation and Alignment quality</button></p>
+<p><table width=95%><tr><td align=left><a class="logo" href="http://www.sbg.bio.ic.ac.uk/phyre2/webscripts/make_pdf.cgi?fileid=56da5616b4559c93/aligs/c1t3qD_.53.alig.html" onClick ="return hideTip();" onMouseOver="return tooltip('Generate JPEG image of this page.', '', 'width:200');" onMouseOut="return hideTip();"><img border=0 src="../webimg/jpeg_icon.jpg"></a></td></tr></table></p>
+<table border=0><tr><td bgcolor=darkred>&nbsp;&nbsp</td><td>Insertion relative to template</td>
+<tr><td bgcolor=orange>&nbsp;&nbsp</td><td>Deletion relative to template</td></tr>
+<tr><td style="border-style:solid; border-width:thick; border-color:red;">&nbsp;&nbsp</td><td>Catalytic residue from the <a href="http://www.ebi.ac.uk/thornton-srv/databases/CSA/">CSA</a></td></tr>
+<tr><td colspan=2>&nbsp</td></tr>
+<tr><td colspan=2><a href="http://www.sbg.bio.ic.ac.uk/phyre2/html/help.cgi?id=help/interpret_normal#alignment">Detailed help on interpreting your alignment</a></td></tr></table>
+<br><br>
+<table cellpadding=0 cellspacing=0>
+<tr>
+<td style="width:100px;">&nbsp</td><td>&nbsp</td>
+<td class="index">51</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">60</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">70</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td></td>
+<td class="index">.</td><td class="index">.</td><td class="index">80</td><td class="index">.</td><td></td>
+<td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">90</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td></tr>
+<tr>
+<td class="darkshade">Predicted Secondary structure</td><td>&nbsp</td>
+<td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td align=center>.</td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td align=center>.</td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td></tr>
+<tr confidence=1 style="display:none;">
+<td class="darkshade">Query SS confidence</td><td>&nbsp</td>
+<td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td align=center>.</td>
+<td><hr color="#f1d532" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td align=center>.</td>
+<td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td></tr>
+<tr>
+<td class="midshadess">Query Sequence</td><td>&nbsp</td>
+<td style="color:990000;">K</td><td style="color:009900;">V</td><td style="color:990000;">K</td><td style="color:009900;">L</td><td style="color:009900;">I</td><td style="color:ff6600;">T</td><td style="color:ff6600;">P</td><td style="color:990000;">D</td><td style="color:ff6600;">G</td><td style="color:ff6600; background-color:#d2d0c1">P</td><td style="color:009900;">I</td><td style="color:990000;">E</td><td style="color:0000cc; background-color:#d2d0c1">F</td><td style="color:990000;">D</td><td style="color:6600CC;">C</td><td style="color:ff6600;">P</td><td style="color:990000;">D</td><td style="color:990000;">N</td><td style="color:009900;">V</td><td style="color:0000cc;">Y</td><td style="color:009900;">I</td><td style="color:009900;">L</td><td style="color:990000; background-color:#d2d0c1">D</td><td style="color:990000;">Q</td><td style="color:ff6600;">A</td><td style="color:990000;">E</td><td style="color:990000; background-color:#d2d0c1">E</td><td align=center bgcolor=orange>.</td>
+<td style="color:ff6600;">A</td><td style="color:ff6600; background-color:#d2d0c1">G</td><td style="color:990000;">H</td><td style="color:990000;">D</td><td align=center bgcolor=orange>.</td>
+<td style="color:009900;">L</td><td style="color:ff6600;">P</td><td style="color:0000cc;">Y</td><td style="color:ff6600;">S</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:990000;">R</td><td style="color:ff6600;">A</td><td style="color:ff6600; background-color:#d2d0c1">G</td><td style="color:ff6600;">S</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:ff6600;">S</td><td style="color:ff6600; background-color:#d2d0c1">S</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:ff6600;">A</td><td style="color:ff6600;">G</td><td style="color:990000;">K</td><td style="color:009900; background-color:#d2d0c1">I</td></tr>
+<tr consqual=1 style="display:none">
+<td class="darkshade">Query Conservation</td><td>&nbsp</td>
+<td>&nbsp</td><td><hr color=#737065 size=10></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td align=center>.</td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td><td>&nbsp</td><td align=center>.</td><td><hr color=#737065 size=4></td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td><td>&nbsp</td><td><hr color=#737065 size=10></td><td>&nbsp</td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#737065 size=4></td></tr>
+<tr consqual=1 style="display:none">
+<td class="midshadess">Alig confidence</td><td>&nbsp</td>
+<td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td align=center>.</td><td><hr color="#65b449" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td align=center>.</td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#c93c38" size=4></td></tr>
+<tr consqual=1 style="display:none">
+<td class="darkshade">Template Conservation</td><td>&nbsp</td>
+<td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=10></td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td>&nbsp</td><td><hr color=#d2d0c1 size=10></td><td><hr color=#d2d0c1 size=10></td><td><hr color=#d2d0c1 size=10></td><td><hr color=#d2d0c1 size=10></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=10></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td></tr>
+<tr>
+<td class="midshadess">Template Sequence</td><td>&nbsp</td>
+<td style="color:990000;">R</td><td style="color:009900;">I</td><td style="color:ff6600;">S</td><td style="color:ff6600;">A</td><td style="color:ff6600;">T</td><td style="color:009900;">I</td><td style="color:990000;">N</td><td style="color:ff6600;">G</td><td style="color:990000;">K</td><td style="color:ff6600; background-color:#d2d0c1">P</td><td style="color:990000;">R</td><td style="color:009900;">V</td><td style="color:0000cc; background-color:#d2d0c1">F</td><td style="color:0000cc;">Y</td><td style="color:009900;">V</td><td style="color:990000;">E</td><td style="color:ff6600;">P</td><td style="color:990000;">R</td><td style="color:009900;">M</td><td style="color:990000;">H</td><td style="color:009900;">L</td><td style="color:ff6600;">A</td><td style="color:990000; background-color:#d2d0c1">D</td><td style="color:ff6600;">A</td><td style="color:009900;">L</td><td style="color:990000;">R</td><td style="color:990000; background-color:#d2d0c1">E</td><td style="color:009900;">V</td><td style="color:009900;">V</td><td style="color:ff6600; background-color:#d2d0c1">G</td><td style="color:009900;">L</td><td style="color:ff6600;">T</td><td style="color:ff6600;">G</td><td style="color:ff6600;">T</td><td style="color:990000;">K</td><td style="color:009900;">I</td><td style="color:ff6600;">G</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:990000;">E</td><td style="color:990000;">Q</td><td style="color:ff6600; background-color:#d2d0c1">G</td><td style="color:009900;">V</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:ff6600;">G</td><td style="color:ff6600; background-color:#d2d0c1">S</td><td style="color:6600CC; background-color:#d2d0c1">C</td><td style="color:ff6600;">T</td><td style="color:009900;">I</td><td style="color:009900;">L</td><td style="color:009900; background-color:#d2d0c1">I</td></tr>
+<tr>
+<td nowrap class="darkshade">Template Known Secondary structure</td><td>&nbsp</td>
+<td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td>T</td><td>T</td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td>T</td><td>T</td><td>S</td><td>B</td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td>T</td><td>T</td><td><hr></td><td><hr></td><td>T</td><td>T</td><td>S</td><td><hr></td><td><hr></td><td>S</td><td><hr></td><td>S</td><td>S</td><td>S</td><td>S</td><td>S</td><td><hr></td><td>T</td><td>T</td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td></tr>
+<tr>
+<td class="midshadess">Template Predicted Secondary structure</td><td>&nbsp</td>
+<td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td><hr></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_s.png"></td><td class="strand"><img class="strimg" src="../webimg/beta_a.png"></td></tr>
+<tr confidence=1 style="display:none">
+<td class="darkshade">Template SS confidence</td><td>&nbsp</td>
+<td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#76c0d1" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#41ac82" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#b7db48" size=4></td><td><hr color="#41ac82" size=4></td></tr>
+<tr>
+<td style="width:100px;">&nbsp</td><td>&nbsp</td>
+<td class="index">11</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">20</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">30</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">40</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">50</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">60</td></tr>
+<tr><td>&nbsp</td></tr>
+</table>
+<table width=30% border=0><tr>
+<td style="width:7em;" class="darkshadelalig">Download:</td><td class="midshade"><a href="c1t3qD_.53.alig.txt">Text version</a></td>
+<td class="midshade"><a href="http://www.sbg.bio.ic.ac.uk/phyre2/webscripts/genfasta.cgi?jobid=56da5616b4559c93&rank=53">FASTA version</a></td>
+</tr></table><p>No model constructed - rank, confidence too low</p>
+<br><br><center><hr width=95%> 
+<p>Phyre is for <font color=red>non-commercial use</font> only</p>
+<p>Commercial users please contact <a href="mailto:m.sternberg@imperial.ac.uk">Michael Sternberg</a></p>
+<table width=60% border=0>
+<tr align=center><td colspan=3><font size=-1><b>Please cite:</b> The Phyre2 web portal for protein modeling, prediction and analysis</font></td></tr> 
+
+<tr align=center><td colspan=3><font size=-1>Kelley LA <i>et al.</i> <i>Nature Protocols</i>
+10, 845-858 (2015)
+      [<a href="http://www.nature.com/nprot/journal/v10/n6/full/nprot.2015.053.html">paper</a>]
+      [<a href="http://www.nature.com/nprot/journal/v10/n6/ris/nprot.2015.053.ris">Citation
+       link</a>]</font></td></tr> 
+<tr><td colspan=3>&nbsp</td></tr>
+<tr><td align=center>
+
+<table border=0> 
+
+<tr><td><font size=-2>&copy <a href="http://www.sbg.bio.ic.ac.uk">Structural Bioinformatics Group</a>, Imperial College, London</td></tr> 
+
+<tr><td><font size=-2><a
+href="http://www.sbg.bio.ic.ac.uk/people/kelley/kelley.html">Lawrence
+Kelley</a>, <a href="http://www.imperial.ac.uk/people/m.sternberg">Michael Sternberg</a></td><td>&nbsp</td></tr> 
+<tr>
+<td><font size=-2><a href="http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=disclaimer">Disclaimer</a></font></td></tr>
+<tr>
+<td><font size=-2><a href="http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=terms_conditions">Terms and Conditions</a></font></td>
+</tr></table> 
+
+</td>
+<td align=center><a class="logo" href="http://www.elixir-uk.org"><img src="http://www.sbg.bio.ic.ac.uk/phyre2/html/images/Elixir_logo_small.png"></a></td>
+<td align=center> 
+<table class="sbgic" bgcolor=white><tr><td><img src="http://www.sbg.bio.ic.ac.uk/phyre/html/sbg_small.gif"> 
+<img src="http://www.sbg.bio.ic.ac.uk/phyre/html/imperial_logo.gif"> 
+</td></tr> 
+<tr><td><img src="http://www.sbg.bio.ic.ac.uk/phyre2/html/images/bbsrc.gif"><br>Phyre2 is part of <b><a href="http://genome3d.eu/">Genome3D</a></b></td></tr>
+</table></td></tr>
+</table> 
+<br><br>
+</body></html>
+<script>
+var isiPad = navigator.userAgent.match(/iPad/i) != null;
+
+// For use within iPad developer UIWebView
+// Thanks to Andrew Hedges!
+var ua = navigator.userAgent;
+var isiPad = /iPad/i.test(ua) || /iPhone OS 3_1_2/i.test(ua) || /iPhone OS 3_2_2/i.test(ua);
+
+      function ChangeCSSRule(xElement,xValue) {
+        var strCSS = 'cssRules';
+if(document.all) {
+           strCSS = 'rules';
+        }
+        document.styleSheets[0][strCSS][0].style[xElement] = xValue;
+      }
+if(isiPad){
+ChangeCSSRule('display','none');
+document.body.style.zoom = "50%";
+}
+</script>
+