Merge branch 'tasks/JAL-3035_remove_dasobert_dependency' into develop

[jalview.git] / help / html / webServices / dbreffetcher.html

diff --git a/help/html/webServices/dbreffetcher.html b/help/html/webServices/dbreffetcher.html
index 83c80ba..1f61dea 100644 (file)
--- a/help/html/webServices/dbreffetcher.html
+++ b/help/html/webServices/dbreffetcher.html
@@ -30,8 +30,7 @@
   ID, and can be viewed in full via the
   <a href="../io/exportseqreport.html">Sequence Details</a> window. .
   Jalview also uses references for the retrieval of
-  <a href="../features/viewingpdbs.html">PDB structures</a> and <a
-    href="../features/dasfeatures.html">DAS features</a>, and for
+  <a href="../features/viewingpdbs.html">PDB structures</a>, and for
   retrieving sequence cross-references such as the protein products of a
   DNA sequence.
 </p>
@@ -40,21 +39,18 @@
   application provides three ways to access the retrieval function.
   Either:
 <ul>
-  <li>select the <strong>Discover PDB IDs</strong> option from the
-    structure submenu of the sequence's popup menu
-  </li>
-  <li>Choose one of the options from the 'Fetch DB Refs' submenu in
+       <li>select the <strong>Structure Chooser...</strong> option from
+               the Sequence ID popup menu.
+       </li>
+       <li>Choose one of the options from the 'Fetch DB Refs' submenu in
     the alignment window's <strong>Web Services</strong> menu:
     <ul>
-      <li><em>Standard Databases</em> will fetch references from
-        the EBI databases plus currently selected DAS sources</li>
-      <li>The other entries submenus leading to lists of individual
+                       <li><em>Standard Databases</em> will fetch references from EBI
+                               databases appropriate for the sequence type (Nucleotide or Protein)</li>
+                       <li>The other entries submenus leading to lists of individual
         database sources that Jalview can access.</li>
     </ul>
   </li>
-  <li>Answer 'Yes' when asked if you wish to retrieve database
-    references for your sequences after initiating a DAS Sequence
-    Feature fetch.</li>
 </ul>
 <p>Jalview discovers references for a sequence by generating a set
   of ID queries from the ID string of each sequence in the alignment. It