Merge branch 'releases/Release_2_11_3_Branch'

[jalview.git] / src / jalview / datamodel / SequenceGroup.java

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index 326793d..7e53c46 100755 (executable)
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -303,8 +303,9 @@ public class SequenceGroup implements AnnotatedCollectionI
             newannot.restrict(startRes, endRes);
             newannot.setSequenceRef(seqs[ipos]);
             newannot.adjustForAlignment();
-            ContactMatrixI cm = seq.getContactMatrixFor(seq.getAnnotation()[a]);
-            if (cm!=null)
+            ContactMatrixI cm = seq
+                    .getContactMatrixFor(seq.getAnnotation()[a]);
+            if (cm != null)
             {
               seqs[ipos].addContactListFor(newannot, cm);
             }
@@ -644,7 +645,8 @@ public class SequenceGroup implements AnnotatedCollectionI
     } catch (java.lang.OutOfMemoryError err)
     {
       // TODO: catch OOM
-      System.out.println("Out of memory loading groups: " + err);
+      jalview.bin.Console
+              .outPrintln("Out of memory loading groups: " + err);
     }
     return upd;
   }