Merge branch 'releases/Release_2_11_3_Branch'

[jalview.git] / src / jalview / io / MSFfile.java

diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java
index 158feb9..ed7049e 100755 (executable)
--- a/src/jalview/io/MSFfile.java
+++ b/src/jalview/io/MSFfile.java
@@ -136,7 +136,7 @@ public class MSFfile extends AlignFile
       }
     } catch (IOException e)
     {
-      System.err.println("Exception parsing MSFFile " + e);
+      jalview.bin.Console.errPrintln("Exception parsing MSFFile " + e);
       e.printStackTrace();
     }
 
@@ -169,8 +169,9 @@ public class MSFfile extends AlignFile
       }
       else
       {
-        System.err.println("MSFFile Parser: Can't find sequence for "
-                + headers.get(i));
+        jalview.bin.Console
+                .errPrintln("MSFFile Parser: Can't find sequence for "
+                        + headers.get(i));
       }
     }
   }
@@ -200,7 +201,8 @@ public class MSFfile extends AlignFile
         }
       } catch (Exception e)
       {
-        System.err.println("Exception during MSF Checksum calculation");
+        jalview.bin.Console
+                .errPrintln("Exception during MSF Checksum calculation");
         e.printStackTrace();
       }
     }