Merge branch 'features/JAL-2393customMatrices' into develop

[jalview.git] / test / jalview / schemes / ScoreMatrixPrinter.java

diff --git a/test/jalview/schemes/ScoreMatrixPrinter.java b/test/jalview/schemes/ScoreMatrixPrinter.java
deleted file mode 100644 (file)
index 80241fb..0000000
--- a/test/jalview/schemes/ScoreMatrixPrinter.java
+++ /dev/null
@@ -1,64 +0,0 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-package jalview.schemes;
-
-import jalview.api.analysis.ScoreModelI;
-import jalview.gui.JvOptionPane;
-
-import java.util.Map;
-
-import org.testng.annotations.BeforeClass;
-
-public class ScoreMatrixPrinter
-{
-
-  @BeforeClass(alwaysRun = true)
-  public void setUpJvOptionPane()
-  {
-    JvOptionPane.setInteractiveMode(false);
-    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
-  }
-
-  public void printAllMatrices()
-  {
-    for (Map.Entry<String, ScoreModelI> sm : ResidueProperties.scoreMatrices
-            .entrySet())
-    {
-      System.out.println("Matrix " + sm.getKey());
-      System.out.println(sm.getValue().toString());
-    }
-  }
-
-  public void printHTMLMatrices()
-  {
-    for (Map.Entry<String, ScoreModelI> _sm : ResidueProperties.scoreMatrices
-            .entrySet())
-    {
-      if (_sm.getValue() instanceof ScoreMatrix)
-      {
-        ScoreMatrix sm = (ScoreMatrix) _sm.getValue();
-        System.out.println("Matrix " + _sm.getKey());
-        System.out.println(sm.outputMatrix(true));
-      }
-    }
-  }
-
-}