remove unnecessary constructor

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index ceec54b..1dafb91 100755 (executable)
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -48,24 +48,6 @@ public abstract class AlignFile extends FileParse
     {\r
     }\r
 \r
-    /**\r
-     * Creates a new AlignFile object.\r
-     *\r
-     * @param inStr DOCUMENT ME!\r
-     */\r
-    public AlignFile(String inStr)\r
-    {\r
-        initData();\r
-        System.out.println("is this ever called??");\r
-\r
-        try\r
-        {\r
-            parse();\r
-        }\r
-        catch (Exception ex)\r
-        {\r
-        }\r
-    }\r
 \r
     /**\r
      * Constructor which parses the data from a file of some specified type.\r

diff --git a/src/jalview/io/BLCFile.java b/src/jalview/io/BLCFile.java
index 56d40f9..16cc9c0 100755 (executable)
--- a/src/jalview/io/BLCFile.java
+++ b/src/jalview/io/BLCFile.java
@@ -42,15 +42,6 @@ public class BLCFile extends AlignFile
     {\r
     }\r
 \r
-    /**\r
-     * Creates a new BLCFile object.\r
-     *\r
-     * @param inStr DOCUMENT ME!\r
-     */\r
-    public BLCFile(String inStr)\r
-    {\r
-        super(inStr);\r
-    }\r
 \r
     /**\r
      * Creates a new BLCFile object.\r

diff --git a/src/jalview/io/ClustalFile.java b/src/jalview/io/ClustalFile.java
index 2ea1d2f..30c1400 100755 (executable)
--- a/src/jalview/io/ClustalFile.java
+++ b/src/jalview/io/ClustalFile.java
@@ -32,11 +32,6 @@ public class ClustalFile
   {\r
   }\r
 \r
-  public ClustalFile(String inStr)\r
-  {\r
-    super(inStr);\r
-  }\r
-\r
   public ClustalFile(String inFile, String type)\r
       throws IOException\r
   {\r

diff --git a/src/jalview/io/FastaFile.java b/src/jalview/io/FastaFile.java
index 6d218f4..bfcfaca 100755 (executable)
--- a/src/jalview/io/FastaFile.java
+++ b/src/jalview/io/FastaFile.java
@@ -41,16 +41,6 @@ public class FastaFile extends AlignFile
     /**\r
      * Creates a new FastaFile object.\r
      *\r
-     * @param inStr DOCUMENT ME!\r
-     */\r
-    public FastaFile(String inStr)\r
-    {\r
-        super(inStr);\r
-    }\r
-\r
-    /**\r
-     * Creates a new FastaFile object.\r
-     *\r
      * @param inFile DOCUMENT ME!\r
      * @param type DOCUMENT ME!\r
      *\r

diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java
index b3d434e..d7c3775 100755 (executable)
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -40,15 +40,6 @@ public class FeaturesFile extends AlignFile
     {\r
     }\r
 \r
-    /**\r
-     * Creates a new FeaturesFile object.\r
-     *\r
-     * @param inStr DOCUMENT ME!\r
-     */\r
-    public FeaturesFile(String inStr)\r
-    {\r
-        super(inStr);\r
-    }\r
 \r
     /**\r
      * Creates a new FeaturesFile object.\r

diff --git a/src/jalview/io/JPredFile.java b/src/jalview/io/JPredFile.java
index 0734ccd..4a07c9a 100755 (executable)
--- a/src/jalview/io/JPredFile.java
+++ b/src/jalview/io/JPredFile.java
@@ -44,15 +44,6 @@ public class JPredFile extends AlignFile
     Hashtable Symscores; // indexes of symbol annotation properties in sequenceI vector\r
     private int QuerySeqPosition;\r
 \r
-    /**\r
-     * Creates a new JPredFile object.\r
-     *\r
-     * @param inStr DOCUMENT ME!\r
-     */\r
-    public JPredFile(String inStr)\r
-    {\r
-        super(inStr);\r
-    }\r
 \r
     /**\r
      * Creates a new JPredFile object.\r

diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java
index bae4342..7d9c07c 100755 (executable)
--- a/src/jalview/io/MSFfile.java
+++ b/src/jalview/io/MSFfile.java
@@ -44,15 +44,6 @@ public class MSFfile extends AlignFile
     {\r
     }\r
 \r
-    /**\r
-     * Creates a new MSFfile object.\r
-     *\r
-     * @param inStr DOCUMENT ME!\r
-     */\r
-    public MSFfile(String inStr)\r
-    {\r
-        super(inStr);\r
-    }\r
 \r
     /**\r
      * Creates a new MSFfile object.\r

diff --git a/src/jalview/io/PIRFile.java b/src/jalview/io/PIRFile.java
index b958456..4c07ac9 100755 (executable)
--- a/src/jalview/io/PIRFile.java
+++ b/src/jalview/io/PIRFile.java
@@ -34,11 +34,6 @@ public class PIRFile
   {\r
   }\r
 \r
-  public PIRFile(String inStr)\r
-  {\r
-    super(inStr);\r
-  }\r
-\r
   public PIRFile(String inFile, String type)\r
       throws IOException\r
   {\r

diff --git a/src/jalview/io/PfamFile.java b/src/jalview/io/PfamFile.java
index 8056f38..1af7573 100755 (executable)
--- a/src/jalview/io/PfamFile.java
+++ b/src/jalview/io/PfamFile.java
@@ -32,11 +32,6 @@ public class PfamFile
   {\r
   }\r
 \r
-  public PfamFile(String inStr)\r
-  {\r
-    super(inStr);\r
-  }\r
-\r
   public PfamFile(String inFile, String type)\r
       throws IOException\r
   {\r

diff --git a/src/jalview/io/PileUpfile.java b/src/jalview/io/PileUpfile.java
index c945fd5..6826f67 100755 (executable)
--- a/src/jalview/io/PileUpfile.java
+++ b/src/jalview/io/PileUpfile.java
@@ -43,15 +43,7 @@ public class PileUpfile  extends MSFfile
     public PileUpfile()\r
     {\r
     }\r
-    /**\r
-     * Creates a new MSFfile object.\r
-     *\r
-     * @param inStr DOCUMENT ME!\r
-     */\r
-    public PileUpfile(String inStr)\r
-    {\r
-        super(inStr);\r
-    }\r
+\r
 \r
     /**\r
      * Creates a new MSFfile object.\r