JAL-1950 patch groovy bootstrap for importing hmmer3 json

diff --git a/examples/groovy/hmmertestimport.groovy b/examples/groovy/hmmertestimport.groovy
index 88bd0e1..9f0d34e 100644 (file)
--- a/examples/groovy/hmmertestimport.groovy
+++ b/examples/groovy/hmmertestimport.groovy
@@ -1,5 +1,5 @@
-// def alv = new jalview.io.FileLoader().LoadFileWaitTillLoaded("examples/testdata/hmmer3/alignment_res.fa.gz","File").getViewport();
-def alv = jalview.bin.Jalview.getCurrentAlignFrame().getViewport();
+ def alv = new jalview.io.FileLoader().LoadFileWaitTillLoaded("examples/testdata/hmmer3/alignment_res.fa.gz",jalview.io.DataSourceType.FILE).getViewport();
+//def alv = jalview.bin.Jalview.getCurrentAlignFrame().getViewport();
 def al = alv.getAlignment();
 def jproc = new jalview.ws.ebi.HmmerJSONProcessor(al)
 jproc.parseFrom(new jalview.io.FileParse("/Users/jprocter/git/jalview/examples/testdata/hmmer3/hmmeresult.json.gz",jalview.io.DataSourceType.FILE))