examples/groovy/hmmertestimport.groovy

   1  def alv = new jalview.io.FileLoader().LoadFileWaitTillLoaded("examples/testdata/hmmer3/alignment_res.fa.gz",jalview.io.DataSourceType.FILE).getViewport();
   2 //def alv = jalview.bin.Jalview.getCurrentAlignFrame().getViewport();
   3 def al = alv.getAlignment();
   4 def jproc = new jalview.ws.ebi.HmmerJSONProcessor(al)
   5 jproc.parseFrom(new jalview.io.FileParse("/Users/jprocter/git/jalview/examples/testdata/hmmer3/hmmeresult.json.gz",jalview.io.DataSourceType.FILE))
   6 jproc.updateView(alv)