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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / analysis / AlignmentSorter.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-05-22 James ProcterJAL-1551 spotless commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2023-02-23 James ProcterJAL-4134 - brutal hack to build a tree clustering colum... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... commit | commitdiff
2018-06-22 gmungocJAL-3032 avoid assignments on the same line as synchronized commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn commit | commitdiff
2017-05-31 gmungocJAL-2574 preparation for Sequence.findFeatures(col1... commit | commitdiff
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548... commit | commitdiff
2017-05-22 gmungocJAL-2544 check feature overlaps selection region commit | commitdiff
2017-05-19 gmungocJAL-2544 only include features in selected columns... commit | commitdiff
2017-05-19 gmungocJAL-2490 performant lookup of features for sorting commit | commitdiff
2017-05-19 gmungocJAL-2505 unit test for sort by feature density, Javadoc commit | commitdiff
2017-05-18 gmungocJAL-2490 initial unit tests prior to refactoring commit | commitdiff
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca... commit | commitdiff
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-02-12 gmungocJAL-2008 updates for String[] to List<String> change commit | commitdiff
2016-02-04 gmungocJAL-2005 added (stable) sort methods parameterised by commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! commit | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-09-23 darolmarJAL-1355 commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header commit | commitdiff
2012-10-03 jprocterformatting commit | commitdiff
2012-06-13 jprocterjavatidy commit | commitdiff
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from... commit | commitdiff
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... commit | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) commit | commitdiff
2011-09-27 jprocterapply version 2.7 copyright commit | commitdiff
2011-09-16 jprocterpatch for JAL-935 - warning messages raised when alignm... commit | commitdiff
2010-09-23 jprocterapply jalview code style commit | commitdiff
2010-09-23 jprocterJalview 2.6 source licence commit | commitdiff
2010-04-30 jprocterjalview 2.5 release banner commit | commitdiff
2010-04-14 jprocterfix order/reverse order issue for sortByFeature commit | commitdiff
2009-08-21 jprocternew sortbyPID for specific start/end region commit | commitdiff
2009-06-08 jprocterapply gpl development license commit | commitdiff
2008-12-19 jproctersort by length commit | commitdiff
2008-12-15 jproctertemporary fix and note about null feature group mucking... commit | commitdiff
2008-12-08 jprocteroutput average score to stdout commit | commitdiff
2008-12-08 jprocternew sort functions for ordering sequence by annotated... commit | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch commit | commitdiff
2007-11-16 jproctertodo for sortbyPID operating on current selection rathe... commit | commitdiff
2007-04-26 jprocteradded 'sort by sequence associated annotation score' commit | commitdiff
2007-02-07 amwaterhouseFormatting commit | commitdiff
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport commit | commitdiff
2006-12-05 amwaterhousesequence is char [] commit | commitdiff
2006-11-09 amwaterhouse1.1 compatible commit | commitdiff
2006-11-07 amwaterhousehidden seqs and setOrder bug fixed commit | commitdiff
2006-10-26 amwaterhouseSequences may be hidden, not in this aligment commit | commitdiff
2006-10-24 amwaterhousesetOrder is public commit | commitdiff
2006-08-21 amwaterhouseheader updated commit | commitdiff
2006-07-18 amwaterhouseWorks on strings, not seqs commit | commitdiff
2006-07-12 amwaterhousesequences are private in SequenceGroup commit | commitdiff
2005-06-30 amwaterhouseFormatting changes commit | commitdiff
2005-06-16 amwaterhouseSort Groups modified commit | commitdiff
2005-06-08 amwaterhouseFormatted source commit | commitdiff
2005-06-08 amwaterhouseGPL license added commit | commitdiff
2005-05-30 jprocterChanged sortByPID to use the gapped PID function. commit | commitdiff
2005-05-24 jprocterseveral ordering bug fixes. commit | commitdiff
2005-05-22 jprocterAdded alignment ordering option to 'Sort by' and implem... commit | commitdiff
2005-05-20 jprocterVarious sort methods added and bugs fixed (coping with... commit | commitdiff
2004-12-14 amwaterhouseChoosing sort again reverses the sort order commit | commitdiff
2004-11-02 amwaterhouseJalview Imported Sources start commit | commitdiff