Merge remote-tracking branch 'origin/tasks/JAL-3035_remove_dasobert_dependency' into...
[jalview.git] / src / jalview / analysis / PCA.java
2018-05-07 gmungocJAL-1767 save PCA D and E vectors instead of 'details...
2018-05-04 gmungocJAL-1767 refactorings to enable faithful restore of...
2018-04-27 gmungocJAL-1767 refactoring and tidying of RotatableCanvas...
2018-04-26 gmungocJAL-2962 code tidying/documentation (non-functional...
2018-04-25 gmungocJAL-1767 minor field tidying prior to functional changes
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira...
2017-04-10 gmungocJAL-2403 unit tests for PCA.computeSimilarity, signatur...
2017-04-10 gmungocJAL-2403 removed remaining jvCalcMode references from PCA
2017-03-23 gmungocJAL-2397 scale PCA by PID to alignment width to match...
2017-03-23 gmungocJAL-2393 code tidy and comments, PIDDistanceModel depre...
2017-02-27 gmungocJAL-1632 add score model params to PCAModel and PCA...
2017-02-24 gmungocJAL-838 added 'SeqSpace' PID mode, added parameters...
2017-02-24 gmungocJAL-1403 preserve range of distance scores for similarity
2017-02-24 gmungocJAL-2403 JAL-1483 push 'reverseRange' inside Matrix
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy...
2017-02-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as...
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode...
2017-02-07 gmungocJAL-2379 removed unused commented code
2017-02-06 gmungocJAL-2379 computePairwiseScores() moved to ScoreMatrix
2017-02-03 gmungocJAL-2379 'direct' pairwise score calculation for PCA...
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory
2017-01-26 gmungocJAL-2380 code tidy after review
2017-01-17 gmungocJAL-2379 use SparseMatrix for encoded sequences, tidy...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula...
2014-02-25 Jim ProcterJAL-1454 catch exceptions during calculation and report...
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-06-15 jprocterformatting
2012-06-15 jprocterJAL-1125 option to switch between Jalview and SeqSpace...
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop
2011-12-08 jprocter(JAL-1013) allow sequence type to be specified enabling...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-08-18 jprocteroutput the eigenvector matrix in full: JAL-616
2010-04-30 jprocterjalview 2.5 release banner
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2007-02-07 amwaterhouseFormatting
2006-08-21 amwaterhouseheader updated
2006-07-18 amwaterhouseTakes string[] instead of seq[]
2005-09-23 amwaterhouseCapture output as details
2005-09-08 amwaterhouseREmove unnecessary imports
2005-06-30 amwaterhouseFormatting changes
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-25 jproctertidied up system.out messages and moved many to stderr.
2005-01-12 jprocterrandom change 3
2005-01-12 jprocteranother dummy.
2005-01-12 jprocterirrelevant comment.
2004-11-02 amwaterhouseJalview Imported Sources start