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JAL-3675 release notes for JAL-3750 JAL-3751
[jalview.git] / src / jalview / bin /
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... tree | commitdiff
2020-09-17 Jim ProcterJAL-3750 parse protocol before checking if argument... tree | commitdiff
2020-09-02 Ben SoaresJAL-3280 Test for remote release build_properties file... tree | commitdiff
2020-09-01 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking... tree | commitdiff
2020-08-31 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew... tree | commitdiff
2020-08-25 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... tree | commitdiff
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3561_JAL-3660_fileformatexport_... tree | commitdiff
2020-08-12 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 tree | commitdiff
2020-08-05 Jim ProcterMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL... tree | commitdiff
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... tree | commitdiff
2020-07-08 Ben SoaresMerge branch 'task/JAL-3609_HiDPI_support_in_java'... tree | commitdiff
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 tree | commitdiff
2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error tree | commitdiff
2020-07-07 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi... tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error tree | commitdiff
2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... tree | commitdiff
2020-07-01 Ben SoaresMerge branch 'task/JAL-3608_property_set_laf_and_tests_... tree | commitdiff
2020-06-21 Ben SoaresJAL-3609 Report when scale setting used. tree | commitdiff
2020-06-21 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI.... tree | commitdiff
2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick tree | commitdiff
2020-06-16 Jim ProcterMerge branch 'bug/JAL-3561_translatefileformats' into... patch/JAL-3561_JAL-3660_fileformatexport_CLI tree | commitdiff
2020-06-16 Jim ProcterJAL-3660 JAL-3561 output alignment as requested file... bug/JAL-3561_translatefileformats tree | commitdiff
2020-06-16 Ben SoaresJAL-3608 formatting save only tree | commitdiff
2020-06-16 Ben SoaresJAL-3608 formatting save only tree | commitdiff
2020-05-22 soaresJAL-3609 corrected maxdimension to mindimension. Adjust... tree | commitdiff
2020-05-20 Ben SoaresJAL-3609 removed debugging prints tree | commitdiff
2020-05-19 Ben SoaresJAL-3609 changed property names to something more palat... tree | commitdiff
2020-05-19 Ben SoaresJAL-3609 system properties to force a scale, or automat... tree | commitdiff
2020-05-19 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly... tree | commitdiff
2020-05-15 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... tree | commitdiff
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files tree | commitdiff
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console tree | commitdiff
2020-02-27 Ben SoaresMerge branch 'develop' into improvement/JAL-3543_dont_r... tree | commitdiff
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown... tree | commitdiff
2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into... tree | commitdiff
2020-01-10 Ben SoaresJAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax... tree | commitdiff
2020-01-09 Ben SoaresJAL-3477 Refactoring based on CR-JAL-189 tree | commitdiff
2020-01-09 Ben SoaresJAL-3477 Javadoc, refactoring and slight changes to... tree | commitdiff
2019-12-06 Ben SoaresJAL-3449 Added more versions to getdown splashscreen... tree | commitdiff
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version... tree | commitdiff
2019-11-20 Ben SoaresJAL-3477 A bit of refactoring for the better tree | commitdiff
2019-11-19 Ben SoaresJAL-3210 removing overly complicated logging. Settling... tree | commitdiff
2019-11-18 Ben SoaresJAL-3477 New jvmmemmax config option in getdown and... tree | commitdiff
2019-11-18 Ben SoaresJAL-3477 New sensible default decisions on memory,... tree | commitdiff
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu tree | commitdiff
2019-06-26 Jim ProcterJAL-3334 fix - always load full SO to resolve the seque... tree | commitdiff
2019-06-26 Jim ProcterJAL-3111 get rid of nasty tab characters tree | commitdiff
2019-06-19 Ben SoaresJAL-3321 Last pieces of the getdown-launcher.jar upgrad... tree | commitdiff
2019-06-17 Ben SoaresJAL-3310 JAL-3300 two getdown fixes merged tree | commitdiff
2019-06-17 Jim ProcterJAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu tree | commitdiff
2019-06-14 Ben SoaresJAL-3278 A system.out.println turned into a cache.log... tree | commitdiff
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from... tree | commitdiff
2019-06-14 Jim ProcterJAL-3299 JAL-3280 javadoc on BuildDetails bean tree | commitdiff
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no... tree | commitdiff
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS... tree | commitdiff
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition... tree | commitdiff
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template... tree | commitdiff
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates... tree | commitdiff
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building... tree | commitdiff
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... tree | commitdiff
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and... tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... tree | commitdiff
2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... tree | commitdiff
2019-03-06 gmungocJAL-3035 more das bits removed tree | commitdiff
2019-03-04 gmungocMerge remote-tracking branch 'origin/tasks/JAL-3035_rem... tree | commitdiff
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... tree | commitdiff
2018-09-18 Jim ProcterJAL-3035 more dedasification tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings tree | commitdiff
2018-07-17 bsoaresJAL-3065 tree | commitdiff
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more ! tree | commitdiff
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented... tree | commitdiff
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work... tree | commitdiff
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH) tree | commitdiff
2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width... tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-01-16 gmungocJAL-1270 JAL-2885 clear properties before load tree | commitdiff
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML... tree | commitdiff
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect... tree | commitdiff
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-02-08 Jim ProcterJAL-2366 updated default URL to jalview.org/services... tree | commitdiff
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-26 kiramtJAL-2316 Updated to use identifiers jalview service tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... tree | commitdiff
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes tree | commitdiff
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test... tree | commitdiff
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... tree | commitdiff
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