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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / gui / AlignViewport.java
2023-10-19 Ben SoaresJAL-4305 Isolate and unify the Jalview object from... commit | commitdiff
2023-07-19 Ben SoaresJAL-244 Changes to Annotation labels width now adjusts... commit | commitdiff
2023-05-26 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... commit | commitdiff
2023-05-25 James ProcterJAL-4134 popup menu and annotation row property to... commit | commitdiff
2023-05-25 Ben SoaresJAL-4186 Turn JvOptionPane Callable<Void> handlers... commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2023-03-15 Ben SoaresJAL-629 Commands more objecty, less classy. FileLoader... commit | commitdiff
2023-02-22 James ProcterJAL-4133 store/restore alignment view’s charWidth and... commit | commitdiff
2023-02-22 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff
2023-02-16 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... commit | commitdiff
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff
2022-11-23 Ben SoaresJAL-629 Doing things with the command line arguments commit | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 Non-blocking modal dialogs for unsave... commit | commitdiff
2022-06-10 Jim ProcterJAL-2349 JAL-4027 JAL-3855 quick hack to add contact... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChan... commit | commitdiff
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... commit | commitdiff
2020-08-27 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch commit | commitdiff
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop commit | commitdiff
2020-07-31 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... commit | commitdiff
2020-06-29 Jim ProcterMerge branch 'bug/JAL-3490findSpanHiddenGaps' into... commit | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into... bug/JAL-3412idWidthDiscrepancy commit | commitdiff
2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks commit | commitdiff
2020-02-19 Jim ProcterJAL-3538 anti-aliasing enabled by default commit | commitdiff
2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog... commit | commitdiff
2020-02-06 gmungocJAL-3509 better placement of call to notifyFeaturesChan... commit | commitdiff
2020-02-06 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... commit | commitdiff
2019-12-09 gmungocJAL-3490 pull up getViewAsVisibleContigs to base class... commit | commitdiff
2019-08-19 gmungocJAL-3412 calculateIdWidth - more consistency, constants... commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-06-24 Jim ProcterJAL-3330 mergeFeatureStyles - needs test coverage commit | commitdiff
2019-04-18 hansonrCorrects incorrect calls to ViewportRanges.setEndSeq() commit | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... commit | commitdiff
2019-03-07 gmungocJAL-2250 default Apply Colour to All Groups selected commit | commitdiff
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'... commit | commitdiff
2018-12-18 gmungocJAL-3048 DialogRunnerI reduced to minimal implementation commit | commitdiff
2018-12-10 gmungocJAL-3048 wip externalise trigger from RunResponse commit | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... commit | commitdiff
2018-12-06 gmungocJAL-3048 response() renamed addResponse(); checkstyle... commit | commitdiff
2018-12-06 gmungocJAL-3048 explicit instead of default 'No' response... commit | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... commit | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... commit | commitdiff
2018-10-04 gmungocJAL-3132 set status message when over sequence id or... commit | commitdiff
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... commit | commitdiff
2018-08-27 hansonrJAL-3026 alignmentFrame.statusBar.setText -> .setStatus commit | commitdiff
2018-07-03 Jim ProcterJAL-3048 openLinkedAlignment refactor to use dialogRunn... commit | commitdiff
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call commit | commitdiff
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759 commit | commitdiff
2017-11-15 gmungocJAL-2835 spike updated with latest commit | commitdiff
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759 commit | commitdiff
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains commit | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-09-29 kiramtJAL-2674 finish with iterators for now commit | commitdiff
2017-09-28 kiramtJAL-2647 more iterators commit | commitdiff
2017-09-14 gmungocJAL-2727 null more fields in AlignmentViewport.dispose... commit | commitdiff
2017-09-05 gmungocJAL-2225 unused collateForPdb removed commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 commit | commitdiff
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class commit | commitdiff
2017-06-27 gmungocJAL-2602 check for null or empty description when copyi... commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... commit | commitdiff
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency... commit | commitdiff
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... commit | commitdiff
2017-05-05 kiramtMerge remote-tracking branch commit | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges commit | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into commit | commitdiff
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling commit | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff
2017-04-27 Jim ProcterJAL-1933 use constant for preference token commit | commitdiff
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA... commit | commitdiff
2017-04-24 kiramtMerge remote-tracking branch commit | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... commit | commitdiff
2017-03-30 gmungocMerge branch 'develop' into features/JAL-2435splitScree... commit | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff
2017-03-21 kiramtJAL-2388 Made ViewportRanges final commit | commitdiff
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code commit | commitdiff
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... commit | commitdiff
2017-03-08 gmungocJAL-2435 copy font changes across split screen commit | commitdiff
2017-03-07 kiramtJAL-2388 Missed commit commit | commitdiff
2017-03-06 kiramtJAL-2388 Dependency tidy commit | commitdiff
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree... commit | commitdiff
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of... commit | commitdiff
2017-03-01 kiramtJAL-2388 Reverted to previous commit | commitdiff
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile commit | commitdiff
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp... commit | commitdiff
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... commit | commitdiff
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow commit | commitdiff
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface... commit | commitdiff
2017-02-10 gmungocJAL-2371 small move of code, typo correction commit | commitdiff
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is... commit | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... commit | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... commit | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... commit | commitdiff
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