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[jalview.git] / src / jalview / gui / Desktop.java

2018-09-18	gmungoc	JAL-3063 temporary extra menu option to save/load proje...	blob \| commitdiff
2018-09-11	Jim Procter	Merge branch 'develop' into releases/Release_2_11_Branch	blob \| commitdiff \| diff to current
2018-09-06	Jim Procter	JAL-3091 code committed in error (failed patch for...	blob \| commitdiff \| diff to current
2018-09-06	Jim Procter	JAL-3091 release notes for JAL-3104	blob \| commitdiff \| diff to current
2018-06-05	Jim Procter	JAL-3009 news reader thread should be in background... bugs/JAL-3009_blockingNetworkThreads	blob \| commitdiff \| diff to current
2018-06-05	Jim Procter	JAL-3009 Identifiers.Org retrieval on background thread.	blob \| commitdiff \| diff to current
2018-05-28	gmungoc	Merge branch 'bug/JAL-797' into develop	blob \| commitdiff \| diff to current
2018-05-28	gmungoc	Merge remote-tracking branch 'origin/releases/Release_2...	blob \| commitdiff \| diff to current
2018-05-25	Jim Procter	JAL-1460 temp variable for clearer conditional and... bug/JAL-1460_dragndropWindows	blob \| commitdiff \| diff to current
2018-05-25	Jim Procter	JAL-1460 javadoc	blob \| commitdiff \| diff to current
2018-05-24	Jim Procter	JAL-1460 tidied up the use of windows link file parser	blob \| commitdiff \| diff to current
2018-05-24	Jim Procter	JAL-1460 more complete drag'n'drop debugging info and...	blob \| commitdiff \| diff to current
2018-05-24	Jim Procter	JAL-1460 process .lnk files dragged to Jalview when...	blob \| commitdiff \| diff to current
2018-05-24	Jim Procter	JAL-1460 new data flavor for URLs added belt-and-braces...	blob \| commitdiff \| diff to current
2018-05-21	gmungoc	JAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW bug/JAL-797	blob \| commitdiff \| diff to current
2018-05-07	gmungoc	Merge branch 'releases/Release_2_10_4_Branch' into...	blob \| commitdiff \| diff to current
2018-04-12	gmungoc	JAL-2944 tidies for review comments	blob \| commitdiff \| diff to current
2018-04-05	Jim Procter	JAL-2944 pull up structure viewer discovery routine...	blob \| commitdiff \| diff to current
2018-03-16	gmungoc	Merge branch 'bug/JAL-2865removeGC' into develop	blob \| commitdiff \| diff to current
2018-02-21	Jim Procter	Merge branch 'bug/JAL-2778again' into releases/Release_...	blob \| commitdiff \| diff to current
2018-02-21	Jim Procter	JAL-2778 reinstate transparent windows to avoid ugly... bug/JAL-2778again	blob \| commitdiff \| diff to current
2018-01-10	gmungoc	JAL-2865 unhelpful System.gc() calls removed bug/JAL-2865removeGC	blob \| commitdiff \| diff to current
2018-01-10	kiramt	JAL-797: Added keybindings so that ctrl- or cmd-W close...	blob \| commitdiff \| diff to current
2017-11-07	gmungoc	JAL-2069 update spike branch with latest	blob \| commitdiff \| diff to current
2017-11-01	kiramt	JAL-2778 added setopaque again, and super.paintComponent(s)	blob \| commitdiff \| diff to current
2017-10-31	kiramt	JAL-2756 update for new EBI https link	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-25	Jim Procter	JAL-2779 remove empty block and if statement	blob \| commitdiff \| diff to current
2017-10-20	Jim Procter	JAL-2779 keep a reference to original Aqua manager...	blob \| commitdiff \| diff to current
2017-10-18	Jim Procter	JAL-2779 switch order for updating the current alignmen...	blob \| commitdiff \| diff to current
2017-10-18	Jim Procter	JAL-2779 remove dead code	blob \| commitdiff \| diff to current
2017-10-18	Jim Procter	JAL-2779 hook in our own AquaInternalFrameManager when...	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-1625 ensure we don’t regress on JAL-20 - we always... patch/JAL-2732	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-2733 redraw after changing the memory status displa...	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-1625 JAL-1900 preserve the original DesktopManager...	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-1900 JAL-1625 back out OSX specific double buffer...	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-1551 standard code formatting	blob \| commitdiff \| diff to current
2017-09-15	Jim Procter	JAL-2732 force a redraw after resize/drag to clear...	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-02	tcofoegbu	JAL-2473 revised default minimum dimension for Alignmen...	blob \| commitdiff \| diff to current
2017-05-29	Jim Procter	Merge branch 'bug/JAL-2536' into develop	blob \| commitdiff \| diff to current
2017-05-29	Jim Procter	JAL-2536 tweak javadoc wording	blob \| commitdiff \| diff to current
2017-05-17	Jim Procter	Merge branch 'features/JAL-2447experimentalFlag' into...	blob \| commitdiff \| diff to current
2017-05-16	kiramt	JAL-2536 Overview window sizing not subject to min... bug/JAL-2536	blob \| commitdiff \| diff to current
2017-05-02	gmungoc	JAL-2447 EXPERIMENTAL preference (option in Tools menu) features/JAL-2447experimentalFlag	blob \| commitdiff \| diff to current
2017-04-10	tcofoegbu	JAL-2473 added improvement to apply default / custom...	blob \| commitdiff \| diff to current
2017-03-24	kiramt	JAL-2314 Tidy up	blob \| commitdiff \| diff to current
2017-03-23	kiramt	JAL-2314 Tweaks to stop thread sync issues	blob \| commitdiff \| diff to current
2017-03-23	kiramt	JAL-2314 Tidies	blob \| commitdiff \| diff to current
2017-01-26	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-01-25	gmungoc	JAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid...	blob \| commitdiff \| diff to current
2017-01-12	gmungoc	JAL-2344 now flagging formats as 'identifiable' instead...	blob \| commitdiff \| diff to current
2017-01-11	gmungoc	JAL-2344 FileFormats singleton for formats, FileFormatI...	blob \| commitdiff \| diff to current
2016-12-15	kiramt	JAL-2316 Changes following review.	blob \| commitdiff \| diff to current
2016-12-13	kiramt	Merge branch 'develop' into features/JAL-2316	blob \| commitdiff \| diff to current
2016-12-08	gmungoc	JAL-2359 add Window menu entry only after all danger...	blob \| commitdiff \| diff to current
2016-12-07	gmungoc	JAL-2344 handle null format, simplify JalviewFileChoose...	blob \| commitdiff \| diff to current
2016-12-07	kiramt	JAL-2316 Restructure identifiers.org download	blob \| commitdiff \| diff to current
2016-12-05	kiramt	JAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...	blob \| commitdiff \| diff to current
2016-11-28	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	JAL-2344 use .equals() to compare FileFormatI objects	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-11-15	kiramt	JAL-2316 Moved url providers into own package	blob \| commitdiff \| diff to current
2016-11-15	kiramt	JAL-2316 Refactoring of functionality to provide urls...	blob \| commitdiff \| diff to current
2016-11-07	gmungoc	JAL-2282 show url links that need checked; remove ...	blob \| commitdiff \| diff to current
2016-11-04	kiramt	JAL-2282 Better check for existing url links	blob \| commitdiff \| diff to current
2016-11-04	kiramt	JAL-2282 Message box stays on top at Jalview open;...	blob \| commitdiff \| diff to current
2016-11-03	kiramt	JAL-2282 If checkbox on warning dialog is unclicked...	blob \| commitdiff \| diff to current
2016-11-01	kiramt	JAL-2282 Changed DB accession id token to $DB_ACCESSION...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-24	Jim Procter	Merge branch 'releases/Release_2_10_0_Branch'	blob \| commitdiff \| diff to current
2016-10-17	kiramt	Re-attempt to fix JAL-1552 by removing extra calls...	blob \| commitdiff \| diff to current
2016-10-11	kiramt	JAL-1552 added acceptDrop call before getTransferable... bug/JAL-1552dragndropurl	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-09-22	gmungoc	JAL-2216 null currentAlignFrame on close all windows...	blob \| commitdiff \| diff to current
2016-08-31	gmungoc	JAL-2077 test isPopupTrigger in mouseReleased or mouseC...	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	JAL-2183 defensive check for openFrameCount < 0 (should...	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	Merge branch 'develop' into features/filetypeEnum	blob \| commitdiff \| diff to current
2016-07-29	Jim Procter	JAL-2164 JAL-1772 explodeViews can be static, so make...	blob \| commitdiff \| diff to current
2016-07-12	gmungoc	FileFormat enum wip changes	blob \| commitdiff \| diff to current
2016-07-11	gmungoc	file format enum wip changes	blob \| commitdiff \| diff to current
2016-06-21	gmungoc	JAL-2074 suppress prompt to save closed Groovy script...	blob \| commitdiff \| diff to current
2016-06-21	gmungoc	JAL-2074 reuse Groovy window when reopening; rebind...	blob \| commitdiff \| diff to current
2016-06-20	Jim Procter	Merge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding	blob \| commitdiff \| diff to current
2016-05-30	Jim Procter	JAL-1552 fix JAL-2122 resolve File->string before addin...	blob \| commitdiff \| diff to current
2016-05-26	Jim Procter	JAL-1552 refactor shared dataflavor hander	blob \| commitdiff \| diff to current
2016-05-02	gmungoc	JAL-1812 bind Groovy to Jalview rather than Desktop...	blob \| commitdiff \| diff to current
2016-04-28	gmungoc	JAL-2083 removed use of reflection for Groovy	blob \| commitdiff \| diff to current
2016-04-25	gmungoc	JAL-1812 JAL-2068 only allow one Groovy console open...	blob \| commitdiff \| diff to current
2016-04-24	Jim Procter	JAL-2077 - reinstate popups on osx	blob \| commitdiff \| diff to current
2016-04-24	Jim Procter	JAL-2075 make GroovyConsole a singleton so tests requir...	blob \| commitdiff \| diff to current
2016-04-22	gmungoc	JAL-1812 JAL-2068 add Run Groovy Script to AlignFrame...	blob \| commitdiff \| diff to current
2016-03-23	tcofoegbu	JAL-2009 added programmatic custom feature setting...	blob \| commitdiff \| diff to current
2016-02-12	gmungoc	Merge branch 'develop' into	blob \| commitdiff \| diff to current
2016-02-09	tcofoegbu	JAL-1975 updated image export pipeline to produce more...	blob \| commitdiff \| diff to current
2015-11-21	gmungoc	JAL-653 JAL-1968 FeaturesFile now handles Jalview or...	blob \| commitdiff \| diff to current
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