| 2019-08-13 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
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| 2019-06-28 |
tva | JAL-2629 add ability to add background frequencies... |
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| 2019-06-17 |
gmungoc | JAL-2792 JAL-3187 linked features (if shown) in Feature... |
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| 2019-06-17 |
gmungoc | JAL-3187 add sequence to feature details table (and... |
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| 2019-06-04 |
Jim Procter | Merge branch 'develop' into developtomchmmer |
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| 2019-03-28 |
gmungoc | Merge branch 'feature/JAL-3181linkOrdering' into develop |
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| 2019-03-11 |
gmungoc | Merge branch 'feature/JAL-3127_seqidChainshading' into... |
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| 2019-03-07 |
gmungoc | Merge branch 'feature/JAL-3180colourAnnotationMenu... |
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| 2019-01-08 |
gmungoc | JAL-3180 Disabled 'By Annotation' group colour menu... feature/JAL-3180colourAnnotationMenu |
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| 2019-01-04 |
gmungoc | JAL-3181 refactor: extracted buildLinkMenu() for testab... feature/JAL-3181linkOrdering |
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| 2019-01-03 |
gmungoc | JAL-3181 order link menu items |
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| 2018-11-30 |
gmungoc | JAL-2420 don't offer Reveal All over alignment panel bug/JAL-2420revealAllMenu |
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| 2018-10-09 |
Jim Procter | JAL-3127 pass reference to AlignViewportI when creating... |
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| 2018-04-17 |
gmungoc | JAL-2629 choice of hmm profile now a parameter not... |
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| 2018-04-16 |
gmungoc | JAL-2629 JAL-2937 remove redundant is/setHMMConsensusSe... |
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| 2018-03-30 |
gmungoc | JAL-2629 select HMM selects sequence under cursor |
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| 2018-03-16 |
gmungoc | Merge branch 'develop' into trialMerge |
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| 2018-03-07 |
Jim Procter | Merge branch 'releases/Release_2_10_4_Branch' into... |
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| 2018-02-20 |
gmungoc | Merge branch 'develop' into features/mchmmer |
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| 2018-02-02 |
gmungoc | JAL-984 merged to spikes-mungo |
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| 2018-01-31 |
gmungoc | JAL-2792 added tooltip to menu items in case of truncation |
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| 2018-01-31 |
kiramt | JAL-2759 minor refactor to hiding bitsets |
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| 2018-01-16 |
kiramt | JAL-2759 setup hideBitSet over range for hideInsertions |
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| 2018-01-15 |
kiramt | JAL-2759 Minor doc and naming changes |
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| 2017-11-07 |
gmungoc | JAL-2069 update spike branch with latest |
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| 2017-11-06 |
gmungoc | JAL-2820 include attribute value used for feature colou... |
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| 2017-10-27 |
gmungoc | JAL-1793 spike branch updated to latest |
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| 2017-10-26 |
gmungoc | JAL-2792 html table for Feature Details report |
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| 2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
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| 2017-10-24 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF; lambd... |
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| 2017-10-12 |
Jim Procter | JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview |
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| 2017-10-05 |
gmungoc | JAL-2738 update spikes/mungo |
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| 2017-10-05 |
gmungoc | JAL-2744 add score to feature details report, descripti... |
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| 2017-10-04 |
gmungoc | JAL-2744 handle null features list |
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| 2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
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| 2017-09-28 |
gmungoc | JAL-2744 simple Feature Details report from Popup menu |
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| 2017-09-28 |
gmungoc | JAL-2744 refactor PopupMenu constructor to enable addin... |
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| 2017-09-05 |
Jim Procter | Merge branch 'master' into portforward/JAL-2675_2102b1t... |
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| 2017-09-03 |
Jim Procter | Merge branch 'feature/JAL-2587' into documentation... |
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| 2017-08-25 |
TZVanaalten | JAL-2629 remove sequence and group HMMER options |
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| 2017-08-25 |
kiramt | JAL-2587 Removed annoying double repaint on hide insertions |
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| 2017-08-23 |
tzvanaalten | JAL-2629 selected HMM is now a sequence, not a HMM |
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| 2017-08-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList |
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| 2017-08-18 |
TZVanaalten | Merge branch 'develop' into features/hmmer |
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| 2017-08-16 |
Jim Procter | JAL-2418 source formatting |
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| 2017-08-15 |
TZVanaalten | JAL-2629 selected HMM name now shown in HMMER menu |
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| 2017-08-13 |
TZVanaalten | JAL-2629 hmmalign can now be run from the sequence... |
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| 2017-08-11 |
TZVanaalten | JAL-2629 add ability to select HMMs |
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| 2017-07-25 |
TZVanaalten | JAL-2629 add non-functional HMMER menu |
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| 2017-07-24 |
gmungoc | spike branch updated from latest features/JAL-2446 |
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| 2017-06-27 |
gmungoc | JAL-1858 repaint after Amend Features dialog |
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| 2017-06-27 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
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| 2017-06-09 |
gmungoc | JAL-2594 avoid stack trace creating feature on gapped... |
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| 2017-06-05 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-06-04 |
Jim Procter | JAL-2291 only hide/show columns intersecting with curre... |
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| 2017-06-04 |
Jim Procter | JAL-2291 use HiddenColumns.hideMarkedBits and take... |
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| 2017-06-04 |
Jim Procter | JAL-2291 ‘Hide Insertions’ now operates on selection... |
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| 2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
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| 2017-05-17 |
gmungoc | JAL-2504 use (and update) defaults for new feature... |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges |
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| 2017-05-04 |
gmungoc | JAL-2504 allow feature type to be specified for Create... |
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| 2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
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| 2017-04-05 |
gmungoc | JAL-2361 simplify constructors, select unsaved but... |
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| 2017-02-14 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice |
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| 2017-02-08 |
gmungoc | JAL-2405 set context on selection group for tailored... |
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| 2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPane... |
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| 2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refact... |
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| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
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| 2017-01-20 |
gmungoc | JAL-2383 make popup colour menu order and wording consi... |
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| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-19 |
gmungoc | JAL-2383 restore PID colour threshold from project... |
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| 2017-01-17 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
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| 2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-11 |
gmungoc | JAL-2344 FileFormats singleton for formats, FileFormatI... |
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| 2017-01-05 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
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| 2017-01-05 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-05 |
gmungoc | JAL-2373 set state of Above PID, By Conservation in... |
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| 2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
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| 2016-12-22 |
gmungoc | JAL-2360 fix bug that prematurely created a SequenceGroup |
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| 2016-12-22 |
gmungoc | JAL-2360 structure viewers now using ColourMenuHelper... |
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| 2016-12-21 |
gmungoc | JAL-2360 ColourMenuHelper now builds and selects items... |
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| 2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignF... |
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| 2016-12-19 |
gmungoc | JAL-2361 select colour menu item by matching its name... |
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| 2016-12-16 |
gmungoc | JAL-2360 refactoring for JalviewColourScheme enum, |
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| 2016-12-13 |
gmungoc | JAL-2361 adding items to applet colour menus, TCoffee... |
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| 2016-12-12 |
gmungoc | JAL-2361 extract methods to (re-)build colour menu |
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| 2016-12-01 |
gmungoc | JAL-2346 unused method removed |
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| 2016-11-28 |
gmungoc | Merge branch 'develop' into trialMerge |
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| 2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
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| 2016-11-24 |
gmungoc | Distinguish text-only output formats and others (.jar... |
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| 2016-11-24 |
tcofoegbu | JAL-2326 updated references of JOptionPane to JvOptionPane |
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| 2016-11-24 |
gmungoc | FileFormatI further tweaks, clean compile |
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| 2016-11-16 |
Jim Procter | Merge branch 'features/JAL-1723_sequenceReport' into... |
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| 2016-11-03 |
kiramt | JAL-2282 Link menu disabled if there are no valid links |
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| 2016-11-02 |
kiramt | Merge remote-tracking branch 'origin/bug/JAL-2282'... |
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| 2016-11-02 |
gmungoc | JAL-98 JAL-1854 encapsulate 'magic number' threshold... |
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| 2016-11-01 |
kiramt | JAL-2282 Refactor SequenceAnnotationReport to use refac... |
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| 2016-11-01 |
kiramt | JAL-2282 Refactored URL link creation into UrlLink |
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| 2016-10-31 |
gmungoc | Merge branch 'develop' into features/JAL-1723_sequenceR... |
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