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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / io / FeaturesFile.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2022-12-05 Ben SoaresJAL-629 implementation of --tempfac options commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-01-17 Ben SoaresJAL-3703 fix Gff3 shared InputStream with embedded... commit | commitdiff
2022-01-11 Ben SoaresJAL-3703 fix Gff3 shared InputStream with embedded... commit | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... commit | commitdiff
2020-08-10 Jim ProcterJAL-3691 toUpperCase(Locale.ROOT) for all standard... commit | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop commit | commitdiff
2020-04-16 gmungocJAL-3567 report mapped location for virtual features... commit | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff
2020-01-23 gmungocJAL-3121 'attributes map' in GFF3 without special ... commit | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued... commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-06-18 gmungocJAL-3187 javadoc commit | commitdiff
2019-06-18 gmungocJAL-3304 option to export linked features also for... commit | commitdiff
2019-06-18 gmungocJAL-3304 option to export linked features in Jalview... commit | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... commit | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2018-12-19 gmungocJAL-3178 include non-positional features in their group... bug/JAL-2791exportFilteredFeature commit | commitdiff
2018-09-27 gmungocJAL-2791 refactored Export Features to apply all visibi... commit | commitdiff
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File... commit | commitdiff
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... commit | commitdiff
2018-05-24 gmungocJAL-2997 additional tests commit | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest commit | commitdiff
2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... commit | commitdiff
2017-05-25 gmungocJAL-2490 test coverage of empty and null feature group... commit | commitdiff
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548... commit | commitdiff
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in... commit | commitdiff
2017-05-23 gmungocJAL-2490 improved lookup of features for Export Feature... commit | commitdiff
2017-05-22 gmungocJAL-2505 use setter not direct access to sf.description commit | commitdiff
2017-05-19 gmungocJAL-2490 refactored test for 'hasFeatures' commit | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-24 gmungocFileFormatI further tweaks, clean compile commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-07-18 gmungocfileFormat enum wip changes commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles commit | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly commit | commitdiff
2016-02-25 gmungocJAL-2015 parse/write Jalview feature format pushed... commit | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles commit | commitdiff
2016-01-26 gmungocJAL-1705 derive transcript sequences from gene sequence... commit | commitdiff
2016-01-21 gmungocJAL-1705 include dummy sequences in returned alignment commit | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes commit | commitdiff
2015-11-30 gmungocJAL-652 further refactoring / tests commit | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... commit | commitdiff
2015-11-10 Jim ProcterJAL-653 added missing pragma string to processing filter commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h... commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch commit | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting commit | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch commit | commitdiff
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! commit | commitdiff
2015-06-23 Jim ProcterMerge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892... commit | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... commit | commitdiff
2015-06-11 Jim ProcterJAL-653 tidy comments commit | commitdiff
2015-06-07 Jim ProcterJAL-653 basic GFF3 alignment import wrapper class commit | commitdiff
2015-06-06 Jim ProcterJAL-653 make sure dummy sequences created during GFF... commit | commitdiff
2015-06-06 Jim ProcterJAL-653 first stab at parsing GFF3 pragmas to support... commit | commitdiff
2015-06-06 Jim ProcterJAL-653 gff version number field commit | commitdiff
2015-06-05 Jim ProcterJAL-653 set the warningMessage for the file source... commit | commitdiff
2015-06-05 Jim ProcterJAL-653 GFF attributes parsing mechanism, with first... commit | commitdiff
2015-06-05 Jim ProcterJAL-653 trim initial tab in sequence feature ATTRIBUTES commit | commitdiff
2015-06-05 Jim ProcterJAL-653 allow dummy sequences to be created if a sequen... commit | commitdiff
2015-06-05 Jim ProcterJAL-1551 formatting commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-08-08 j.procter@dundee... JAL-1482 feature renderer and manipulation code refacto... commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop commit | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced... commit | commitdiff
2012-12-07 jprocterformatting and error report cleanup commit | commitdiff
2012-12-07 jprocterproxy commit for Anne Menard <menard.annec@gmail.com... commit | commitdiff
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep... commit | commitdiff
2012-11-15 jproctersource formatting commit | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard commit | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header commit | commitdiff
2012-10-03 jprocterformatting commit | commitdiff
2012-08-14 Anne Menardlast version stay many bugs .. commit | commitdiff
2012-07-16 Anne MenardMerge branch 'develop' of https://source.jalview.org... commit | commitdiff
2012-07-10 Anne Menardv2 commit | commitdiff
2012-07-05 Anne MenardAdd support RNAML format commit | commitdiff
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