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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / io / FileParse.java
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-05-22 James ProcterJAL-1551 spotless commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2022-10-06 Jim ProcterPatch for JAL-4074 - any content ending in ‘gzip’ recog... commit | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2022-01-11 Ben SoaresJAL-3703 fix Gff3 shared InputStream with embedded... commit | commitdiff
2020-08-21 Jim ProcterJAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615... commit | commitdiff
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test commit | commitdiff
2020-08-20 Ben SoaresJAL-2656 better read of (potential) gzip magic bytes commit | commitdiff
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored... commit | commitdiff
2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick commit | commitdiff
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... commit | commitdiff
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... commit | commitdiff
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... commit | commitdiff
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... commit | commitdiff
2020-07-27 gmungocJAL-2656 JAL-3615 check response headers to test for... commit | commitdiff
2020-07-27 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam commit | commitdiff
2020-07-02 gmungocJAL-2656 JAL-3615 check response headers to test for... commit | commitdiff
2020-07-02 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam commit | commitdiff
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in... commit | commitdiff
2019-03-27 hansonrconsolidation of Platform isJS calls commit | commitdiff
2018-07-20 gmungocJAL-3048 revised AlignExportSettings dialog with respon... commit | commitdiff
2018-06-28 hansonrFileAsBytes commit | commitdiff
2018-06-28 hansonrJAL-3032 FileChooser missing correct call to JSToolkit... commit | commitdiff
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File... commit | commitdiff
2018-06-27 hansonrJAL-3026 FileParser for JFileChooser results as ByteArr... commit | commitdiff
2018-06-27 hansonrJAL-3032 part2 local file reading by JFileChooser commit | commitdiff
2018-06-23 hansonrJAL-3026 JDesktop/JInternalFrames support + relative... commit | commitdiff
2018-06-22 hansonrfix for no access-control-origin on jalview site commit | commitdiff
2018-05-24 gmungocJAL-2997 additional tests commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... commit | commitdiff
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_... commit | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-09-02 gmungocJAL-1544 spelling commit | commitdiff
2015-06-26 Jim ProcterJAL-1705 - allow a FileParse to be constructed directly... commit | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... commit | commitdiff
2015-06-18 Jim ProcterJAL-653 JAL-1780 JAL-1543 javadoc and comment about... commit | commitdiff
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference... commit | commitdiff
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... commit | commitdiff
2015-01-23 Jim ProcterJAL-1551 formatting commit | commitdiff
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream... commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip... commit | commitdiff
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support commit | commitdiff
2014-09-23 darolmarJAL-1355 commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff
2013-11-07 Jim ProcterJAL-1286 check if local file ends with .gz and opens... commit | commitdiff
2013-05-13 Jim ProcterJAL-1286 URL stream reader tries to use a GZIPInputStre... commit | commitdiff
2013-04-12 Jim ProcterJAL-1286 URL stream reader tries to use a GZIPInputStre... commit | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header commit | commitdiff
2012-10-03 jprocterformatting commit | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) commit | commitdiff
2011-09-27 jprocterapply version 2.7 copyright commit | commitdiff
2011-01-05 jprocterJAL-727 commit | commitdiff
2010-12-09 jprocterdataIn.ready() is not a test of data source validity! commit | commitdiff
2010-11-14 jprocterrefactored to decouple dependencies due to FileParse... commit | commitdiff
2010-11-14 jprocterrefactored protocol parser and allow human readable... commit | commitdiff
2010-09-23 jprocterJalview 2.6 source licence commit | commitdiff
2010-04-30 jprocterjalview 2.5 release banner commit | commitdiff
2009-06-08 jprocterapply gpl development license commit | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch commit | commitdiff
2008-04-10 jprocterbug fix for Features/Annotations file parameter parsing... commit | commitdiff
2008-01-29 jprocterFileParse object can be re-used to read different files... commit | commitdiff
2007-10-31 jproctererror message associated with an alignment file loading... commit | commitdiff
2007-10-11 jprocterpass up the errormessage in the exception when a dataso... commit | commitdiff
2007-08-22 jprocteradded facility for sending non-fatal warnings back... commit | commitdiff
2007-04-26 jprocterfixed bug in prefix extraction for application commit | commitdiff
2007-04-17 jprocterbugfix. commit | commitdiff
2007-04-17 jprocterrefactored to allow seeks on a FileParse datasource... commit | commitdiff
2007-02-07 amwaterhouseFormatting commit | commitdiff
2006-08-21 amwaterhouseheader updated commit | commitdiff
2006-03-08 amwaterhouseAble to read resources from Zip file commit | commitdiff
2005-06-30 amwaterhouseFormatting changes commit | commitdiff
2005-06-08 amwaterhouseFormatted source commit | commitdiff
2005-06-08 amwaterhouseGPL license added commit | commitdiff
2004-11-02 amwaterhouseJalview Imported Sources start commit | commitdiff