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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / io / JSONFile.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... commit | commitdiff
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... commit | commitdiff
2019-02-04 hansonrfixing array processing order commit | commitdiff
2019-01-29 hansonrJSON writing fix, JColorChooser (mnemonic change) fix commit | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... commit | commitdiff
2019-01-25 hansonrJSON refactoring commit | commitdiff
2018-07-20 gmungocJAL-3048 revised AlignExportSettings dialog with respon... commit | commitdiff
2018-07-11 Jim ProcterJAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 commit | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string... commit | commitdiff
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage commit | commitdiff
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct... commit | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-05-08 gmungocJAL-2505 set type,desc,begin,end,group,score in Sequenc... commit | commitdiff
2017-05-05 kiramtMerge remote-tracking branch commit | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into commit | commitdiff
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to commit | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff
2017-04-25 tcofoegbuJAL-2489 bug fix commit | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop commit | commitdiff
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected... commit | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... commit | commitdiff
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... commit | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI commit | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum commit | commitdiff
2016-08-22 gmungocJAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip commit | commitdiff
2016-07-18 gmungocfileFormat enum wip changes commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array commit | commitdiff
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 organise imports commit | commitdiff
2015-10-08 tcofoegbumerge commit | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting commit | commitdiff
2015-10-07 tcofoegbuJAL-1912 added documentation features/JAL-1912_biojson-per-sequence-annotation commit | commitdiff
2015-10-05 tcofoegbuJAL-1912 house keeping commit | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch commit | commitdiff
2015-10-05 tcofoegbuJAL-1912 updated AnnotationDisplaySettingPojo commit | commitdiff
2015-10-01 tcofoegbuJAL-1912 Double.NaN breaks JSON serialization - added... commit | commitdiff
2015-10-01 tcofoegbuJAL-1912 refactor annotation refsequence assignemnt... commit | commitdiff
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other... commit | commitdiff
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent... commit | commitdiff
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc... commit | commitdiff
2015-09-24 tcofoegbuJAL-1896 bugfix to enabled Jalview restore clustal... commit | commitdiff
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch commit | commitdiff
2015-09-16 tcofoegbuJAL-1881 Bugfix for annotation import from BioJS commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html... commit | commitdiff
2015-08-14 tcofoegbuJAL-1831 added changes to allow auto-generation of... commit | commitdiff
2015-08-13 tcofoegbuJAL-1641 added type to BioJSON sequence object and... commit | commitdiff
2015-08-11 tcofoegbuadd ability to launch jalview from exported html +... commit | commitdiff
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring commit | commitdiff
2015-06-26 tcofoegbuJAL-1641 fixed broken functionalities after refactor commit | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... commit | commitdiff
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference... commit | commitdiff
2015-06-17 Jim ProcterJAL-1784 refactor parse method to directly parse FilePa... commit | commitdiff
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile commit | commitdiff
2015-06-15 tcofoegbuJAL-1641 clean up commit | commitdiff
2015-06-15 tcofoegbuclean up commit | commitdiff
2015-06-12 tcofoegbuJAL-1641 refactor commit | commitdiff
2015-06-10 tcofoegbuupdated build.xml commit | commitdiff
2015-06-10 tcofoegbuJAL-1641 updated applet version commit | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... commit | commitdiff
2015-06-04 tcofoegbuJAL-1641 updated json schema to make it more generic... commit | commitdiff
2015-06-02 tcofoegbuJAL-1641 applet build fix commit | commitdiff
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package commit | commitdiff
2015-05-25 tcofoegbubuild fix commit | commitdiff
2015-05-20 tcofoegbuJAL-1541 minor code clean up, and added test for BioJsH... commit | commitdiff
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... commit | commitdiff
2015-05-12 tcofoegbuJAL_1641 added unit test and minor house keeping commit | commitdiff
2015-05-11 tcofoegbuJAL-1641 cherry-picked changes into develop compatible... commit | commitdiff