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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / io / NewickFile.java
2023-09-08 Ben SoaresJAL-4262 Dialog for GUI and WARN for CLI of old style... commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2023-04-12 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff
2023-03-17 Ben SoaresJAL-629 All applications System.exits going through... commit | commitdiff
2023-02-23 James ProcterJAL-4134 - brutal hack to build a tree clustering colum... commit | commitdiff
2023-02-23 James ProcterJAL-4134 - refactor tree calculation code to work with... commit | commitdiff
2022-06-06 Jim ProcterJAL-4023 store distances as doubles commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-04-04 gmungocJAL-3220 j2sIgnore on main methods on test / utility... commit | commitdiff
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of... commit | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-09-23 darolmarJAL-1355 commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff
2013-06-14 Jim ProcterJAL-1316 compact '' to ' commit | commitdiff
2013-06-14 Jim ProcterJAL-1316 recognise and extract quoted region as nodename commit | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header commit | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) commit | commitdiff
2011-09-27 jprocterapply version 2.7 copyright commit | commitdiff
2010-09-23 jprocterapply jalview code style commit | commitdiff
2010-09-23 jprocterJalview 2.6 source licence commit | commitdiff
2010-04-30 jprocterjalview 2.5 release banner commit | commitdiff
2009-06-08 jprocterapply gpl development license commit | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch commit | commitdiff
2008-04-29 jproctertrial fix for parsing NHX style trees to extract the... commit | commitdiff
2008-01-29 jprocterFileParse object can be re-used to read different files... commit | commitdiff
2007-09-14 jprocterbetter reproduction of compact newick files (removal... commit | commitdiff
2007-09-06 jprocterbootstrap regex 'fixed' and ugly hack to try and get... commit | commitdiff
2007-08-22 jprocterintroduce beginning of bug fix for parsing atv style... commit | commitdiff
2007-08-01 jprocterjavadoc commit | commitdiff
2007-07-25 jprocterbugfix for vamsas demo commit | commitdiff
2007-02-07 amwaterhouseFormatting commit | commitdiff
2006-08-21 amwaterhouseheader updated commit | commitdiff
2005-12-16 jprocterTodo notes for feature issue: 0011711 commit | commitdiff
2005-11-18 jprocterFixed bug dragonfly.compbio.dundee.ac.uk/mantis/view... commit | commitdiff
2005-09-30 amwaterhouseRemove redundancy in Eclipse commit | commitdiff
2005-06-30 amwaterhouseFormatting changes commit | commitdiff
2005-06-08 amwaterhouseFormatted source commit | commitdiff
2005-06-08 amwaterhouseGPL license added commit | commitdiff
2005-05-25 jproctertidied up system.out messages and moved many to stderr. commit | commitdiff
2005-03-30 jprocterFixed a sensible default leaf distance (for files where... commit | commitdiff
2005-03-18 jprocterTree io modifications, including support for polytomous... commit | commitdiff
2005-03-17 jprocterNewick/New Hampshire tree format parser and generator. commit | commitdiff