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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / schemes /
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as... tree | commitdiff
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode... tree | commitdiff
2017-02-09 gmungocJAL-2401 change 'Lower Case Colour' to checkbox with... tree | commitdiff
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory tree | commitdiff
2017-02-09 gmungocJAL-2371 skip upper-casing consensus as it already is tree | commitdiff
2017-02-07 gmungocJAL-2397 PCA gap cost uses last column of score matrix tree | commitdiff
2017-02-07 gmungocJAL-2398 corrected entry for C->R in Blosum62 matrix tree | commitdiff
2017-02-06 gmungocJAL-2379 computePairwiseScores() moved to ScoreMatrix tree | commitdiff
2017-02-03 gmungocJAL-2379 'direct' pairwise score calculation for PCA... tree | commitdiff
2017-02-01 gmungocJAL-2371 (slight!) simplification of isApplicableTo() tree | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... tree | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... tree | commitdiff
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 tree | commitdiff
2017-01-26 gmungocJAL-2360 corrected comment tree | commitdiff
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter... tree | commitdiff
2017-01-06 gmungocJAL-2371 slight simplification of findColour overrides tree | commitdiff
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight... tree | commitdiff
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes tree | commitdiff
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... tree | commitdiff
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items... tree | commitdiff
2016-12-21 gmungocJAL-2360 comment only tree | commitdiff
2016-12-21 gmungocJAL-2360 tidy up, simplify isApplicableTo test tree | commitdiff
2016-12-21 gmungocJAL-2360 no RNAHelices colouring for groups tree | commitdiff
2016-12-21 gmungocJAL-2361 Blosum is enabled for peptide tree | commitdiff
2016-12-21 gmungocJAL-1421 add types to Map tree | commitdiff
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... tree | commitdiff
2016-12-19 gmungocJAL-2360 amended toAppletParameter() for reproducible... tree | commitdiff
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test... tree | commitdiff
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-13 gmungocJAL-2365 test for lightgray, darkgray not lightGray... tree | commitdiff
2016-12-13 gmungocJAL-2360 code formatting only and if-else changed to... tree | commitdiff
2016-12-12 gmungocJAL-2362 return correct lower-case colour; Javadoc... tree | commitdiff
2016-12-02 gmungocJAL-2346 Javadoc correction tree | commitdiff
2016-12-02 gmungocJAL-2346 fixed bug (in code not reached by Jalview) tree | commitdiff
2016-12-01 gmungocJAL-2346 restore choice of annotation for colouring... tree | commitdiff
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns tree | commitdiff
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... tree | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile tree | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... tree | commitdiff
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash... tree | commitdiff
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils tree | commitdiff
2016-10-26 gmungocJAL-2286 modal residue check + commenting tree | commitdiff
2016-10-26 gmungocJAL-2286 javadoc, refactor, unit tests for threshold... tree | commitdiff
2016-10-25 gmungocJAL-2286 use constant for fixed colours tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-25 gmungocJAL-98 field comments updated tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... tree | commitdiff
2016-09-29 Jim ProcterJAL-2236 fix: bail if no context available for subgroup tree | commitdiff
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... tree | commitdiff
2016-08-12 gmungocJAL-1841 bug fixes / code tidy for rna SS rendering... tree | commitdiff
2016-06-22 gmungocJAL-2015 fixed bug in copy constructor and added tests tree | commitdiff
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI tree | commitdiff
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts tree | commitdiff
2016-02-25 gmungocJAL-2015 parse/write Jalview feature format pushed... tree | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles tree | commitdiff
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... tree | commitdiff
2016-02-20 gmungocMerge branch 'JAL-1956_featureStyles' into features... tree | commitdiff
2016-02-20 gmungocJAL-2016 first draft of pre-set feature colour scheme tree | commitdiff
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triple... tree | commitdiff
2015-12-22 gmungocJAL-1421 parameterised map constructor used tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 choose a new RNA Helices palette when annotati... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 don’t change the palette every time an edit... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 reinstate random generation of palette when... tree | commitdiff
2015-09-05 Jim ProcterJAL-1869 make per-sequence RNA helix colours each time... tree | commitdiff
2015-09-05 Jim ProcterJAL-1233 tidy up and use same RNA helix colours in... tree | commitdiff
2015-09-05 Jim ProcterJAL-1081 JAL-841 JAL-1053 JAL-1081 use same selection... tree | commitdiff
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens... tree | commitdiff
2015-09-03 Jim ProcterJAL-1576 fix: trigger broadcast of colour change with... tree | commitdiff
2015-09-03 Jim ProcterJAL-1550 JAL-1551 formatting tree | commitdiff
2015-09-03 Jim ProcterJAL-1233 JAL-1576 copy constructor to propagate helix... tree | commitdiff
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin... tree | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! tree | commitdiff
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev tree | commitdiff
2015-01-07 Jim ProcterJAL-1483 register feature similarity model tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-05 gmungocMerge branch 'Release_2_8_2_Branch' of local repository... tree | commitdiff
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