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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / schemes /
2023-11-13 James ProcterJAL-4090 JAL-1551 source license tree | commitdiff
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply tree | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... tree | commitdiff
2023-04-28 Ben SoaresJAL-629 Change colour scheme shortnames to something... tree | commitdiff
2022-11-13 Ben SoaresJAL-4019 small but important corrections to array order... tree | commitdiff
2022-11-13 Ben SoaresJAL-4019 improvement to short sequence nucleotide detec... tree | commitdiff
2022-11-10 Ben SoaresJAL-4019 Nucleotide Ambiguity Colour Scheme added.... tree | commitdiff
2022-05-12 Ben SoaresJAL-4014 4 gecos colour schemes added tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2021-09-15 gmungocJAL-3788 synchronize concurrent findColour() and alignm... tree | commitdiff
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... tree | commitdiff
2020-02-06 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... tree | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge tree | commitdiff
2019-04-04 gmungocJAL-3220 j2sIgnore on main methods on test / utility... tree | commitdiff
2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with... tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... tree | commitdiff
2019-03-12 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... tree | commitdiff
2019-03-12 gmungocJAL-3127 check for null viewport feature/JAL-3127_seqidChainshading tree | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... tree | commitdiff
2019-03-11 gmungocJAL-3206 strict above/below threshold test restored tree | commitdiff
2019-03-07 gmungocMerge branch 'feature/JAL-3180colourAnnotationMenu... tree | commitdiff
2019-03-07 Ben SoaresJAL-3130 deprecation change preparation tree | commitdiff
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2620a... tree | commitdiff
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3049colour... tree | commitdiff
2019-03-04 gmungocJAL-3206 avoid divide by zero when threshold is graphMi... tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into... tree | commitdiff
2019-03-01 gmungocMerge branch 'bug/JAL-2791exportFilteredFeature' into... tree | commitdiff
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b... tree | commitdiff
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 tree | commitdiff
2019-02-25 gmungocJAL-3200 fast lookup of DSSP3 notation tree | commitdiff
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... tree | commitdiff
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour... tree | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... tree | commitdiff
2018-12-03 gmungocJAL-3063 Castor removed from codebase tree | commitdiff
2018-12-03 gmungocMerge branch 'feature/JAL-3063JAXB' into feature/JAL... tree | commitdiff
2018-11-20 Jim ProcterJAL-3127 Sequence ID Colour and nominal spanish translation tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 javadoc, don’t darken white when shading resid... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 drop redundant hidden representative sequences... tree | commitdiff
2018-11-01 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into tree | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 always look up sequence ID colour from view... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 Colour sequences by ID - need to check that... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... tree | commitdiff
2018-09-27 gmungocJAL-2791 new method to test if feature fails colour... tree | commitdiff
2018-09-21 gmungocJAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour tree | commitdiff
2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature... tree | commitdiff
2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB tree | commitdiff
2018-06-29 gmungocJAL-3049 JAL-2069 colour icon tooltip including by... tree | commitdiff
2018-03-16 gmungocJAL-2620 alternative genetic code translation tables tree | commitdiff
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... tree | commitdiff
2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2017-12-11 gmungocJAL-2843 add colour by attribute, and no value colour... tree | commitdiff
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) tree | commitdiff
2017-11-22 gmungocJAL-2069 Javadoc added only tree | commitdiff
2017-11-16 gmungocJAL-2069 removed unused and redundant thresholdIsMinMax tree | commitdiff
2017-11-15 gmungocJAL-2816 exclude filtered / thresholded out features... tree | commitdiff
2017-11-15 gmungocJAL-2835 spike updated with latest tree | commitdiff
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute... tree | commitdiff
2017-11-07 gmungocJAL-2069 update spike with latest tree | commitdiff
2017-11-07 gmungocJAL-2069 corrected overloaded constructor behaviour tree | commitdiff
2017-11-07 gmungocJAL-2069 update spike branch with latest tree | commitdiff
2017-11-07 gmungocJAL-2069 add attributeName and noValueColour to Feature... tree | commitdiff
2017-11-02 gmungocJAL-2808 reverted to develop (attribute filters removed) tree | commitdiff
2017-10-31 gmungocJAL-2808 revised util.matcher package, 2 filter conditi... tree | commitdiff
2017-10-30 gmungocJAL-2808 add attribute filter(s) to FeatureColour tree | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest tree | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1... tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-18 Jim ProcterMerge branch 'feature/2588' into merge/develop_feature... tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-08-09 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 tree | commitdiff
2017-07-24 gmungocJAL-2624 additional tests for FeatureColour.getColour(), tree | commitdiff
2017-07-23 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-28 kiramtJAL-2588 Gap colour scheme now shown in overview tree | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-06-09 gmungocJAL-2592 distinguish "User Defined" (scheme name) from... bug/JAL-2592userDefinedScheme tree | commitdiff
2017-06-06 gmungocJAL-2589 correct colour for Gap in Score and User Defin... tree | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-05 gmungocJAL-2361 apply any saved changes to current colour... tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice tree | commitdiff
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML... tree | commitdiff
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy... tree | commitdiff
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... tree | commitdiff
2017-02-20 Jim ProcterMerge branch 'features/JAL-2379pcaMemory' into develop tree | commitdiff
2017-02-18 gmungocJAL-2416 better encapsulated 'constants' for BLOSUM62... tree | commitdiff
2017-02-17 gmungocJAL-2416 BLOSUM62 removed from ResidueProperties tree | commitdiff
2017-02-17 gmungocJAL-2416 removed DNA and PAM250 matrices from ResiduePr... tree | commitdiff
2017-02-17 gmungocJAL-2416 scoreMatrices removed from ResidueProperties tree | commitdiff
2017-02-14 gmungocJAL-2346 remove refactored fields, fix test for above... tree | commitdiff
2017-02-14 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice tree | commitdiff
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