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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / workers /
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply tree | commitdiff
2023-10-25 James ProcterJAL-4312 defend against ConcurrentModificationException bug/JAL-4313_cme_in_tests tree | commitdiff
2023-10-19 Ben SoaresJAL-4305 Isolate and unify the Jalview object from... tree | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... tree | commitdiff
2023-06-08 James ProcterJAL-4196 make very sure we avoid CME by defensively... tree | commitdiff
2023-06-06 James ProcterJAL-4160 JAL-4195 wait around until alignFrame calculat... tree | commitdiff
2019-04-18 hansonrexplicit Hashtable objects tree | commitdiff
2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into... tree | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest tree | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into tree | commitdiff
2017-06-04 Jim ProcterJAL-2228 java 1.7 compliance tree | commitdiff
2017-06-02 Jim ProcterJAL-2228 always create zero score annotations, since... tree | commitdiff
2017-06-02 Jim ProcterJAL-2228 always set minimum for count to zero for annot... tree | commitdiff
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient... tree | commitdiff
2017-03-16 Jim ProcterMerge branch 'merges/develop_JAL2295setChimeraAttribute... tree | commitdiff
2017-03-15 gmungocMerge branch 'develop' into bug/JAL-2436featureRenderer... tree | commitdiff
2017-03-09 kiramtJAL-2426 Checks on conservation thread in case we are... tree | commitdiff
2017-03-09 kiramtJAL-2426 Removal of NPE in conservation thread when... tree | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... tree | commitdiff
2017-02-28 kiramtJAL-2426 Removal of NPE in conservation thread when... tree | commitdiff
2017-02-28 kiramtJAL-2426 Checks on conservation thread in case we are... tree | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... tree | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... tree | commitdiff
2017-01-18 gmungocJAL-2228 removed ColumnCounterI, finessed recalc of... tree | commitdiff
2017-01-18 gmungocJAL-2228 removed FeatureCounterI in favour of FeatureSe... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-02 gmungocJAL-1933 gap value as description; minor formatting tree | commitdiff
2016-12-01 Jim ProcterJAL-1933 basic hack to get gap counts shown as an annot... tree | commitdiff
2016-11-18 gmungocJAL-98 with the two types missing from last commit... bug/JAL-98consensusMemory tree | commitdiff
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns tree | commitdiff
2016-11-10 Jim ProcterJAL-2228 patch for Java 7 compatibility tree | commitdiff
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... tree | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile tree | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... tree | commitdiff
2016-09-25 Jim ProcterJAL-2228 base interface for FeatureCounters and factory... tree | commitdiff
2016-09-25 Jim ProcterJAL-2228 interface and worker to allow multiple feature... tree | commitdiff
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... tree | commitdiff
2016-08-07 Jim ProcterJAL-2068 add the worker to the currently displayed... patch/JAL-2068_JAL-2169_multiviewannotworker tree | commitdiff
2016-08-02 Jim ProcterJAL-2068 reinstated false return value for notifyWorking tree | commitdiff
2016-07-20 gmungocJAL-2068 AnnotationWorker create/update annotation... tree | commitdiff
2016-07-19 gmungocJAL-2068 small refactor to reuse shared method tree | commitdiff
2016-07-19 gmungocJAL-2068 update rather than recreate AlignmentAnnotatio... tree | commitdiff
2016-07-18 Jim ProcterJAL-2068 scale annotation display character to width... tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker... tree | commitdiff
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker tree | commitdiff
2016-05-03 gmungocJAL-2068 minimised jalview.gui imports, test for remove... tree | commitdiff
2016-05-02 gmungocJAL-1812 bind Groovy to Jalview rather than Desktop... tree | commitdiff
2016-04-26 gmungocJAL-2068 deleting user-defined annotation removes the... tree | commitdiff
2016-04-22 gmungocJAL-2068 framework and example scripts for pluggable... tree | commitdiff
2016-04-22 gmungocJAL-2068 redundant implements clauses removed tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-05 Jim ProcterJAL-1081 JAL-891 don’t overwrite global colour scheme... tree | commitdiff
2015-09-05 Jim ProcterJAL-1081 JAL-841 JAL-1053 JAL-1081 use same selection... tree | commitdiff
2015-04-13 gmungocJAL-1681 work around ConcurrentModificationException... tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-10-03 gmungocJAL-1506 correct exit on close align frame tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-05-01 Jim ProcterJAL-961 configure conservation worker from alignment... tree | commitdiff
2014-05-01 Jim ProcterJAL-961 store result of conservation analysis worker... tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-09-02 Jim ProcterJAL-1373 pass size of sequence set to consensus renderi... tree | commitdiff
2012-11-15 jproctersource formatting tree | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-08-14 Anne Menardlast version stay many bugs .. tree | commitdiff
2012-06-19 jprocterJAL-961 JAL-975 extend api to support removal of worker... tree | commitdiff
2012-06-14 jprocterJAL-1115 trap exception arising from race condition... tree | commitdiff
2012-06-14 jprocterJAL-961 potentially helpful println statements when... tree | commitdiff
2012-06-12 jprocterJAL-961, JAL-1115 - pending test to ensure only one... tree | commitdiff
2012-06-07 jprocterjavatidy tree | commitdiff
2012-05-31 jprocterjavatidy tree | commitdiff
2011-11-15 jproctertodo tree | commitdiff
2011-11-08 jprocterfix NPE when no annotation workers present ... tree | commitdiff
2011-11-03 jprocter(JAL-812,JAL-811) - generic test for 'calculation invol... tree | commitdiff
2011-11-03 jprocter(JAL-811) - workers hold references to generated annota... tree | commitdiff
2011-10-28 jprocter(JAL-885 JAL-580) ignore invalid RNA structure lines tree | commitdiff
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