JAL-3033 tarball from site
[jalview.git] / src /
2018-06-26 Jim ProcterMerge branch 'develop' into Jalview-BH/JAL-3026
2018-06-26 Jim ProcterJAL-3042 don't allow user to change default history...
2018-06-26 gmungocMerge branch 'Jalview-BH/JAL-3026' of https://source...
2018-06-26 gmungocJAL-3032 don't draw AlphaComposite.Clear on background
2018-06-26 Jim ProcterMerge branch 'tasks/JAL-3035_remove_dasobert_dependency...
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more !
2018-06-26 gmungocJAL-3032 updateOverviewImage on construction
2018-06-26 gmungocJAL-3032 don't place desktop at negative x or y position
2018-06-24 hansonrDialog motif:
2018-06-24 hansonrasynchronous modal dialogs using PropertyChangeListener...
2018-06-24 hansonrJAL-3032
2018-06-24 hansonrAlignmentFrame opacity set to TRUE for JavaScript.
2018-06-23 hansonrorg.json.simple
2018-06-23 hansonrJAL-3032 BrowserLauncher simplified for JS
2018-06-23 hansonrRELATIVE_URL
2018-06-23 hansonrMerge branch 'Jalview-BH/JAL-3026' of https://source...
2018-06-23 hansonrJAL-3026 JDesktop/JInternalFrames support + relative...
2018-06-22 gmungocJAL-3032 avoid assignments on the same line as synchronized
2018-06-22 gmungocMerge branch 'Jalview-BH/JAL-3026' of https://source...
2018-06-22 gmungocJAL-3030 size split frame taller
2018-06-22 hansonrMerge branch 'Jalview-BH/JAL-3026' of https://source...
2018-06-22 hansonrfix for no access-control-origin on jalview site
2018-06-22 gmungocJAL-3032 more informative failure message
2018-06-21 gmungocJAL-3030 allow uncaught exceptions (for easier JS debuggin)
2018-06-21 gmungocJAL-3030 try to open a split frame if file and file2...
2018-06-21 gmungocJAL-3032 round Quality score for tooltip (as it becomes...
2018-06-20 hansonrJAL-3032 for (var var
2018-06-20 hansonrSeqCanvas and OverviewCanvas
2018-06-20 gmungocJAL-3032 simplified _LoadFileWaitTillLoaded with no...
2018-06-20 hansonrJAL-3032 FileLoader fixes for SwingJS
2018-06-20 hansonrupdate of javajs package; adds org.apache.harmony,...
2018-06-20 hansonrBob first commit JAL-3032
2018-06-20 hansonrMessageManager logger to log4j
2018-06-20 gmungocJAL-3032 load properties as "java.properties"
2018-06-20 gmungocJAL-3030 suppress change that goes with JAL-3031
2018-06-20 gmungocJAL-3030 reads features file, properties file
2018-06-19 gmungocJAL-3030 added menu bar
2018-06-19 gmungocJAL-3030 first cut of JalviewJS.main entry point accept...
2018-06-18 hansonrJAL-3026 adding javajs package
2018-06-07 gmungocJAL-2755 correct Javadoc and error handling
2018-06-06 gmungocJAL-3013 ensure Chimera as a symlink gets resolved
2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList
2018-06-04 gmungocJAL-3018 updated REST versions to 6.3
2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed...
2018-05-31 gmungocJAL-2808 pre-fill numeric inequality filter with min...
2018-05-28 gmungocMerge branch 'bug/JAL-797' into develop
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2...
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2992panelHeight' into releases...
2018-05-25 Jim ProcterMerge branch 'bug/JAL-1460_dragndropWindows' into relea...
2018-05-25 gmungocJAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2991_exporttosvgwrapview' into...
2018-05-25 Jim ProcterJAL-2994 add a few future release points for good measu... feature/JAL-2994chimeraPath
2018-05-25 Jim ProcterJAL-1460 temp variable for clearer conditional and... bug/JAL-1460_dragndropWindows
2018-05-25 Jim ProcterJAL-1460 javadoc
2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse...
2018-05-25 gmungocJAL-2994 temporary patch with paths to Chimera for...
2018-05-24 gmungocJAL-2997 additional tests
2018-05-24 Jim ProcterJAL-1460 tidied up the use of windows link file parser
2018-05-24 Jim ProcterJAL-1460 more complete drag'n'drop debugging info and...
2018-05-24 Jim ProcterJAL-1460 process .lnk files dragged to Jalview when...
2018-05-24 Jim ProcterJAL-1460 new data flavor for URLs added belt-and-braces...
2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel
2018-05-23 Jim Procterfix for JAL-2991 - we could do better :/ bug/JAL-2991_exporttosvgwrapview
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number...
2018-05-21 gmungocJAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW bug/JAL-797
2018-05-11 gmungocJAL-2986 corrected findIndex for out of range residue...
2018-05-10 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into...
2018-05-10 Jim ProcterJAL-2920 simplified logic and added corner cases for...
2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure...
2018-05-09 Jim ProcterMerge branch 'patch/JAL-2976_vaqua4_fallback' into...
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented...
2018-05-07 Jim ProcterJAL-2321 ensure default is ‘parseImmediately=true’
2018-05-07 Jim ProcterJAL-2321 use configured values for structure derived...
2018-05-07 Jim ProcterJAL-2321 add secondary structure & temp factor if not...
2018-05-07 Jim ProcterJAL-2321 use StructureImportSettings singleton settings...
2018-05-07 Jim ProcterJAL-2321 isParseImmediately() allows the parse() method...
2018-05-07 Jim ProcterJAL-2321 allow JmolParser to be configured before parsi...
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-05-07 Jim ProcterJAL-2906 apply GPLv3 license source
2018-05-07 Jim ProcterJAL-2960 don’t override a swing method and create infin...
2018-05-04 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_...
2018-05-04 Jim ProcterJAL-2976 patch NPE when trying to open Uniprot FTS
2018-05-04 Jim ProcterJAL-2948 transfer features/annotation is now available...
2018-05-04 Jim ProcterJAL-2960 raise the structure view after adding structur...
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work...
2018-05-01 Jim ProcterJAL-2899 colouring moved from SwingWorker to a backgrou...
2018-04-30 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_...
2018-04-25 Jim ProcterMerge branch 'features/JAL-2944_openStructuresInSelecte...
2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled
2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns
2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnn...
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency...
2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelecte... features/JAL-2944_openStructuresInSelectedView
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelec...
2018-04-12 gmungocJAL-1847 minor post-review updates
2018-04-12 gmungocJAL-2944 tidies for review comments
2018-04-11 Jim ProcterJAL-2946 catch unexpected SIFTS mapping exceptions...
2018-04-09 Jim ProcterJAL-2944 ’new view’ and ‘add to view’ button rather...
2018-04-09 Jim ProcterJAL-1847 superpose checkbox in structure chooser
next