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JAL-3091 update Java 10 known issues/workarounds in whats new
[jalview.git] / src /
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception_nogroov... tree | commitdiff
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings tree | commitdiff
2018-09-03 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988... tree | commitdiff
2018-09-03 gmungocMerge branch 'trialMerge' into releases/Release_2_10_5_... tree | commitdiff
2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of... tree | commitdiff
2018-09-03 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception' into... tree | commitdiff
2018-08-31 Jim ProcterJAL-3095 account for sequence start when highlighting... tree | commitdiff
2018-08-31 Jim ProcterMerge branch 'bug/JAL-3061_RNA_secondary_structure_anno... tree | commitdiff
2018-08-31 Jim ProcterMerge branch 'releases/Release_2_10_5_Branch' of source... tree | commitdiff
2018-08-31 Jim Procterjava doc and fix for JAL-3095 - region of trimmed RNA... tree | commitdiff
2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup tree | commitdiff
2018-08-30 Jim ProcterJAL-3092 make sure base pair counter is always moved... tree | commitdiff
2018-08-28 gmungocJAL-3059 use correct border colour for groups tree | commitdiff
2018-08-28 gmungocJAL-3003 draw selection group outline on main graphics... tree | commitdiff
2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm tree | commitdiff
2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw... tree | commitdiff
2018-08-28 gmungocJAL-3087 include full alignment height in repeating... tree | commitdiff
2018-08-28 gmungocJAL-247 draw/print sequence ids now uses common code... tree | commitdiff
2018-08-27 Ben SoaresJAL-3061 / JAL-3053 tree | commitdiff
2018-08-22 Jim ProcterJAL-2988 workaround for jalview save as dialogs - clear... tree | commitdiff
2018-08-03 Ben SoaresJAL-3061 tree | commitdiff
2018-08-02 Ben SoaresJAL-3053 tree | commitdiff
2018-07-30 bsoaresFixed bug ignoring "alpha" extended braces in RNA SS... tree | commitdiff
2018-07-17 bsoaresJAL-3065 tree | commitdiff
2018-06-07 Jim ProcterMerge branch 'bugs/JAL-3009_blockingNetworkThreads... tree | commitdiff
2018-06-07 gmungocJAL-2920 wrap description in <html/> if it includes... tree | commitdiff
2018-06-06 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... tree | commitdiff
2018-06-06 Jim ProcterJAL-2920 revised TODO for JAL-3025 bug/JAL-2920_uniprotvariantfeature tree | commitdiff
2018-06-06 Jim ProcterJAL-2920 don’t output variant/original sequence as... tree | commitdiff
2018-06-06 Jim ProcterJAL-1920 JAL-3017 use newline not <br/> in description... tree | commitdiff
2018-06-05 Jim ProcterJAL-3009 news reader thread should be in background... bugs/JAL-3009_blockingNetworkThreads tree | commitdiff
2018-06-05 Jim ProcterJAL-3009 Identifiers.Org retrieval on background thread. tree | commitdiff
2018-06-04 Jim ProcterJAL-3017 parse multiple variant elements for uniprot... tree | commitdiff
2018-06-02 Jim ProcterJAL-3017 parse multiple variant elements for uniprot... tree | commitdiff
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2992panelHeight' into releases... tree | commitdiff
2018-05-25 Jim ProcterMerge branch 'bug/JAL-1460_dragndropWindows' into relea... tree | commitdiff
2018-05-25 gmungocJAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight tree | commitdiff
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2991_exporttosvgwrapview' into... tree | commitdiff
2018-05-25 Jim ProcterJAL-2994 add a few future release points for good measu... feature/JAL-2994chimeraPath tree | commitdiff
2018-05-25 Jim ProcterJAL-1460 temp variable for clearer conditional and... bug/JAL-1460_dragndropWindows tree | commitdiff
2018-05-25 Jim ProcterJAL-1460 javadoc tree | commitdiff
2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse... tree | commitdiff
2018-05-25 gmungocJAL-2994 temporary patch with paths to Chimera for... tree | commitdiff
2018-05-24 gmungocJAL-2997 additional tests tree | commitdiff
2018-05-24 Jim ProcterJAL-1460 tidied up the use of windows link file parser tree | commitdiff
2018-05-24 Jim ProcterJAL-1460 more complete drag'n'drop debugging info and... tree | commitdiff
2018-05-24 Jim ProcterJAL-1460 process .lnk files dragged to Jalview when... tree | commitdiff
2018-05-24 Jim ProcterJAL-1460 new data flavor for URLs added belt-and-braces... tree | commitdiff
2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel tree | commitdiff
2018-05-23 Jim Procterfix for JAL-2991 - we could do better :/ bug/JAL-2991_exporttosvgwrapview tree | commitdiff
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number... tree | commitdiff
2018-05-21 gmungocJAL-2920 use HGVS notation for protein variant feature tree | commitdiff
2018-05-10 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... tree | commitdiff
2018-05-10 Jim ProcterJAL-2920 simplified logic and added corner cases for... tree | commitdiff
2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure... tree | commitdiff
2018-05-09 Jim ProcterMerge branch 'patch/JAL-2976_vaqua4_fallback' into... tree | commitdiff
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 ensure default is ‘parseImmediately=true’ tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 use configured values for structure derived... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 add secondary structure & temp factor if not... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 use StructureImportSettings singleton settings... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 isParseImmediately() allows the parse() method... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 allow JmolParser to be configured before parsi... tree | commitdiff
2018-05-07 Jim ProcterJAL-2906 apply GPLv3 license source tree | commitdiff
2018-05-07 Jim ProcterJAL-2960 don’t override a swing method and create infin... tree | commitdiff
2018-05-04 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_... tree | commitdiff
2018-05-04 Jim ProcterJAL-2976 patch NPE when trying to open Uniprot FTS tree | commitdiff
2018-05-04 Jim ProcterJAL-2948 transfer features/annotation is now available... tree | commitdiff
2018-05-04 Jim ProcterJAL-2960 raise the structure view after adding structur... tree | commitdiff
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work... tree | commitdiff
2018-05-01 Jim ProcterJAL-2899 colouring moved from SwingWorker to a backgrou... tree | commitdiff
2018-04-30 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_... tree | commitdiff
2018-04-25 Jim ProcterMerge branch 'features/JAL-2944_openStructuresInSelecte... tree | commitdiff
2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns tree | commitdiff
2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnn... tree | commitdiff
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency... tree | commitdiff
2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelecte... features/JAL-2944_openStructuresInSelectedView tree | commitdiff
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelec... tree | commitdiff
2018-04-12 gmungocJAL-1847 minor post-review updates tree | commitdiff
2018-04-12 gmungocJAL-2944 tidies for review comments tree | commitdiff
2018-04-11 Jim ProcterJAL-2946 catch unexpected SIFTS mapping exceptions... tree | commitdiff
2018-04-09 Jim ProcterJAL-2944 ’new view’ and ‘add to view’ button rather... tree | commitdiff
2018-04-09 Jim ProcterJAL-1847 superpose checkbox in structure chooser tree | commitdiff
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl... tree | commitdiff
2018-04-05 Jim ProcterJAL-2945 resolve model as PDB file. Need to verify... tree | commitdiff
2018-04-05 Jim ProcterJAL-2945 provide access to last highlighted results tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 open selected structures in existing or a... tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 combo box to pick which viewer to load structu... tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 methods to check existence and get a title... tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 allow StructureViewer proxy to be created... tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 get viewer’s title via toString() tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 expose UI update methods in api tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 remove modal prompt logic and expose methods... tree | commitdiff
2018-04-05 Jim ProcterJAL-2944 pull up structure viewer discovery routine... tree | commitdiff
2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters tree | commitdiff
2018-03-21 Jim ProcterMerge branch 'patch/JAL-2754_patch2104forJava8' into... tree | commitdiff
2018-03-21 Jim ProcterJAL-2754 fix eclipse compilation error about referencin... tree | commitdiff
2018-03-21 gmungocJAL-2929 use configure Overview gap colour instead... tree | commitdiff
2018-03-16 gmungocJAL-2922 update FeatureRenderer and repaint feature... tree | commitdiff
2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES tree | commitdiff
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